Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02265

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02260 and AO353_02265 are separated by 180 nucleotidesAO353_02265 and AO353_02270 are separated by 238 nucleotidesAO353_02270 and AO353_02275 are separated by 132 nucleotides AO353_02260: AO353_02260 - hypothetical protein, at 483,274 to 484,065 _02260 AO353_02265: AO353_02265 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 484,246 to 485,154 _02265 AO353_02270: AO353_02270 - isochorismatase, at 485,393 to 485,983 _02270 AO353_02275: AO353_02275 - hypothetical protein, at 486,116 to 486,436 _02275 Position (kb) 484 485 486Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 483.645 kb on + strand, within AO353_02260at 483.645 kb on + strand, within AO353_02260at 483.645 kb on + strand, within AO353_02260at 483.646 kb on - strand, within AO353_02260at 483.646 kb on - strand, within AO353_02260at 483.646 kb on - strand, within AO353_02260at 483.673 kb on + strand, within AO353_02260at 483.673 kb on + strand, within AO353_02260at 483.674 kb on - strand, within AO353_02260at 483.674 kb on - strand, within AO353_02260at 483.775 kb on + strand, within AO353_02260at 483.776 kb on - strand, within AO353_02260at 483.776 kb on - strand, within AO353_02260at 483.815 kb on + strand, within AO353_02260at 483.816 kb on - strand, within AO353_02260at 483.816 kb on - strand, within AO353_02260at 483.964 kb on + strand, within AO353_02260at 483.964 kb on + strand, within AO353_02260at 483.965 kb on - strand, within AO353_02260at 483.965 kb on - strand, within AO353_02260at 483.986 kb on + strandat 483.986 kb on + strandat 483.986 kb on + strandat 483.987 kb on - strandat 483.987 kb on - strandat 483.987 kb on - strandat 484.054 kb on - strandat 484.054 kb on - strandat 484.064 kb on - strandat 484.167 kb on + strandat 484.183 kb on + strandat 484.183 kb on + strandat 484.183 kb on + strandat 484.183 kb on + strandat 484.184 kb on - strandat 484.184 kb on - strandat 484.184 kb on - strandat 484.247 kb on + strandat 484.247 kb on + strandat 484.248 kb on - strandat 484.359 kb on - strand, within AO353_02265at 484.509 kb on - strand, within AO353_02265at 484.547 kb on + strand, within AO353_02265at 484.548 kb on - strand, within AO353_02265at 484.548 kb on - strand, within AO353_02265at 484.548 kb on - strand, within AO353_02265at 484.548 kb on - strand, within AO353_02265at 484.619 kb on + strand, within AO353_02265at 484.619 kb on + strand, within AO353_02265at 484.721 kb on + strand, within AO353_02265at 484.846 kb on + strand, within AO353_02265at 484.846 kb on + strand, within AO353_02265at 484.846 kb on + strand, within AO353_02265at 484.847 kb on - strand, within AO353_02265at 484.847 kb on - strand, within AO353_02265at 484.847 kb on - strand, within AO353_02265at 484.901 kb on + strand, within AO353_02265at 484.901 kb on + strand, within AO353_02265at 484.901 kb on + strand, within AO353_02265at 484.901 kb on + strand, within AO353_02265at 484.902 kb on - strand, within AO353_02265at 484.902 kb on - strand, within AO353_02265at 484.988 kb on + strand, within AO353_02265at 484.988 kb on + strand, within AO353_02265at 484.988 kb on + strand, within AO353_02265at 484.988 kb on + strand, within AO353_02265at 484.988 kb on + strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 484.989 kb on - strand, within AO353_02265at 485.189 kb on + strandat 485.189 kb on + strandat 485.189 kb on + strandat 485.189 kb on + strandat 485.190 kb on - strandat 485.190 kb on - strandat 485.190 kb on - strandat 485.198 kb on - strandat 485.238 kb on + strandat 485.238 kb on + strandat 485.238 kb on + strandat 485.238 kb on + strandat 485.238 kb on + strandat 485.238 kb on + strandat 485.239 kb on - strandat 485.239 kb on - strandat 485.239 kb on - strandat 485.318 kb on + strandat 485.319 kb on - strandat 485.492 kb on + strand, within AO353_02270at 485.492 kb on + strand, within AO353_02270at 485.492 kb on + strand, within AO353_02270at 485.542 kb on + strand, within AO353_02270at 485.595 kb on + strand, within AO353_02270at 485.595 kb on + strand, within AO353_02270at 485.595 kb on + strandat 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.596 kb on - strand, within AO353_02270at 485.803 kb on + strand, within AO353_02270at 485.804 kb on - strand, within AO353_02270at 485.804 kb on - strand, within AO353_02270at 486.052 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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483,645 + AO353_02260 0.47 -0.1
483,645 + AO353_02260 0.47 +0.7
483,645 + AO353_02260 0.47 -0.9
483,646 - AO353_02260 0.47 -1.2
483,646 - AO353_02260 0.47 -0.9
483,646 - AO353_02260 0.47 +0.3
483,673 + AO353_02260 0.50 -0.4
483,673 + AO353_02260 0.50 -0.5
483,674 - AO353_02260 0.51 -0.3
483,674 - AO353_02260 0.51 -1.7
483,775 + AO353_02260 0.63 +0.5
483,776 - AO353_02260 0.63 -0.1
483,776 - AO353_02260 0.63 +0.9
483,815 + AO353_02260 0.68 -0.4
483,816 - AO353_02260 0.68 -0.1
483,816 - AO353_02260 0.68 -0.2
483,964 + AO353_02260 0.87 -1.9
483,964 + AO353_02260 0.87 -2.3
483,965 - AO353_02260 0.87 +2.2
483,965 - AO353_02260 0.87 -1.1
483,986 + +0.6
483,986 + +0.9
483,986 + +1.1
483,987 - -1.7
483,987 - +0.2
483,987 - +0.3
484,054 - -1.3
484,054 - +0.8
484,064 - -1.3
484,167 + -0.1
484,183 + +0.9
484,183 + +0.5
484,183 + -1.7
484,183 + +2.9
484,184 - -1.1
484,184 - +1.9
484,184 - +1.0
484,247 + +0.2
484,247 + -1.7
484,248 - +1.9
484,359 - AO353_02265 0.12 +1.0
484,509 - AO353_02265 0.29 -2.1
484,547 + AO353_02265 0.33 +1.4
484,548 - AO353_02265 0.33 +0.5
484,548 - AO353_02265 0.33 +1.7
484,548 - AO353_02265 0.33 +1.2
484,548 - AO353_02265 0.33 +0.4
484,619 + AO353_02265 0.41 -0.7
484,619 + AO353_02265 0.41 +0.9
484,721 + AO353_02265 0.52 +0.3
484,846 + AO353_02265 0.66 -0.7
484,846 + AO353_02265 0.66 +0.7
484,846 + AO353_02265 0.66 +0.5
484,847 - AO353_02265 0.66 +1.3
484,847 - AO353_02265 0.66 -1.1
484,847 - AO353_02265 0.66 +2.1
484,901 + AO353_02265 0.72 +1.1
484,901 + AO353_02265 0.72 +0.7
484,901 + AO353_02265 0.72 +1.7
484,901 + AO353_02265 0.72 -0.1
484,902 - AO353_02265 0.72 +0.9
484,902 - AO353_02265 0.72 +0.4
484,988 + AO353_02265 0.82 -0.4
484,988 + AO353_02265 0.82 -0.4
484,988 + AO353_02265 0.82 +0.9
484,988 + AO353_02265 0.82 +0.3
484,988 + AO353_02265 0.82 +1.2
484,989 - AO353_02265 0.82 -2.9
484,989 - AO353_02265 0.82 +0.9
484,989 - AO353_02265 0.82 -0.1
484,989 - AO353_02265 0.82 +0.9
484,989 - AO353_02265 0.82 +0.2
484,989 - AO353_02265 0.82 -1.4
484,989 - AO353_02265 0.82 +0.8
484,989 - AO353_02265 0.82 +0.3
484,989 - AO353_02265 0.82 -2.6
484,989 - AO353_02265 0.82 +0.9
484,989 - AO353_02265 0.82 +0.1
484,989 - AO353_02265 0.82 +0.9
484,989 - AO353_02265 0.82 +1.3
485,189 + +0.6
485,189 + -1.4
485,189 + -0.1
485,189 + -0.1
485,190 - +0.4
485,190 - +0.0
485,190 - +0.3
485,198 - -0.3
485,238 + -1.0
485,238 + -0.6
485,238 + -0.6
485,238 + +0.6
485,238 + +0.2
485,238 + -0.4
485,239 - +0.2
485,239 - +1.1
485,239 - +1.5
485,318 + +0.3
485,319 - +0.8
485,492 + AO353_02270 0.17 +0.2
485,492 + AO353_02270 0.17 +1.3
485,492 + AO353_02270 0.17 -0.7
485,542 + AO353_02270 0.25 +0.4
485,595 + AO353_02270 0.34 -0.9
485,595 + AO353_02270 0.34 +0.7
485,595 + -0.1
485,596 - AO353_02270 0.34 +2.1
485,596 - AO353_02270 0.34 -0.2
485,596 - AO353_02270 0.34 -0.1
485,596 - AO353_02270 0.34 +0.9
485,596 - AO353_02270 0.34 -0.9
485,596 - AO353_02270 0.34 +0.3
485,596 - AO353_02270 0.34 -0.7
485,596 - AO353_02270 0.34 -2.1
485,596 - AO353_02270 0.34 -0.7
485,803 + AO353_02270 0.69 +0.0
485,804 - AO353_02270 0.70 +0.7
485,804 - AO353_02270 0.70 +0.2
486,052 + +1.9

Or see this region's nucleotide sequence