Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01995

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01990 and AO353_01995 are separated by 115 nucleotidesAO353_01995 and AO353_02000 are separated by 16 nucleotides AO353_01990: AO353_01990 - UDP-N-acetylglucosamine 2-epimerase, at 421,400 to 422,512 _01990 AO353_01995: AO353_01995 - hypothetical protein, at 422,628 to 426,335 _01995 AO353_02000: AO353_02000 - polysaccharide/polyol phosphate ABC transporter ATP-binding protein, at 426,352 to 427,641 _02000 Position (kb) 422 423 424 425 426 427Strain fitness (log2 ratio) -2 -1 0 1 2 3at 421.664 kb on - strand, within AO353_01990at 421.664 kb on - strand, within AO353_01990at 421.674 kb on + strand, within AO353_01990at 421.674 kb on + strand, within AO353_01990at 421.708 kb on - strand, within AO353_01990at 421.713 kb on - strand, within AO353_01990at 421.756 kb on + strand, within AO353_01990at 421.757 kb on - strand, within AO353_01990at 421.758 kb on + strand, within AO353_01990at 421.820 kb on - strand, within AO353_01990at 421.895 kb on + strand, within AO353_01990at 421.941 kb on - strand, within AO353_01990at 421.982 kb on - strand, within AO353_01990at 422.002 kb on + strand, within AO353_01990at 422.002 kb on + strand, within AO353_01990at 422.002 kb on + strand, within AO353_01990at 422.003 kb on - strand, within AO353_01990at 422.003 kb on - strand, within AO353_01990at 422.027 kb on + strand, within AO353_01990at 422.134 kb on + strand, within AO353_01990at 422.258 kb on - strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.315 kb on + strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.316 kb on - strand, within AO353_01990at 422.372 kb on - strand, within AO353_01990at 422.372 kb on - strand, within AO353_01990at 422.372 kb on - strand, within AO353_01990at 422.470 kb on + strandat 422.471 kb on - strandat 422.471 kb on - strandat 422.512 kb on + strandat 422.513 kb on - strandat 422.594 kb on + strandat 422.631 kb on + strandat 422.683 kb on + strandat 422.713 kb on + strandat 422.713 kb on + strandat 422.713 kb on + strandat 422.717 kb on + strandat 422.717 kb on + strandat 422.718 kb on - strandat 422.829 kb on - strandat 422.854 kb on + strandat 422.854 kb on + strandat 422.854 kb on + strandat 422.855 kb on - strandat 422.884 kb on - strandat 422.910 kb on - strandat 422.910 kb on - strandat 423.081 kb on + strand, within AO353_01995at 423.081 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.142 kb on + strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.143 kb on - strand, within AO353_01995at 423.281 kb on + strand, within AO353_01995at 423.282 kb on - strand, within AO353_01995at 423.282 kb on - strand, within AO353_01995at 423.282 kb on - strand, within AO353_01995at 423.295 kb on + strand, within AO353_01995at 423.295 kb on + strand, within AO353_01995at 423.295 kb on + strand, within AO353_01995at 423.309 kb on + strand, within AO353_01995at 423.309 kb on + strand, within AO353_01995at 423.310 kb on - strand, within AO353_01995at 423.359 kb on + strand, within AO353_01995at 423.525 kb on + strand, within AO353_01995at 423.586 kb on + strand, within AO353_01995at 423.586 kb on + strand, within AO353_01995at 423.587 kb on - strand, within AO353_01995at 423.587 kb on - strand, within AO353_01995at 423.588 kb on + strand, within AO353_01995at 423.589 kb on - strand, within AO353_01995at 423.589 kb on - strand, within AO353_01995at 423.589 kb on - strand, within AO353_01995at 423.600 kb on + strand, within AO353_01995at 423.601 kb on - strand, within AO353_01995at 423.601 kb on - strand, within AO353_01995at 423.602 kb on + strand, within AO353_01995at 423.677 kb on + strand, within AO353_01995at 423.682 kb on - strand, within AO353_01995at 423.682 kb on - strand, within AO353_01995at 423.682 kb on - strand, within AO353_01995at 423.682 kb on - strand, within AO353_01995at 423.705 kb on + strand, within AO353_01995at 423.705 kb on + strand, within AO353_01995at 423.706 kb on - strand, within AO353_01995at 423.748 kb on - strand, within AO353_01995at 423.748 kb on - strand, within AO353_01995at 423.748 kb on - strand, within AO353_01995at 423.751 kb on + strand, within AO353_01995at 423.751 kb on + strand, within AO353_01995at 423.752 kb on - strand, within AO353_01995at 423.752 kb on - strand, within AO353_01995at 423.793 kb on + strand, within AO353_01995at 423.794 kb on - strand, within AO353_01995at 423.794 kb on - strand, within AO353_01995at 423.862 kb on + strand, within AO353_01995at 423.862 kb on + strand, within AO353_01995at 423.863 kb on - strand, within AO353_01995at 423.881 kb on - strand, within AO353_01995at 423.889 kb on + strand, within AO353_01995at 423.893 kb on + strand, within AO353_01995at 423.894 kb on - strand, within AO353_01995at 423.901 kb on + strand, within AO353_01995at 423.902 kb on - strand, within AO353_01995at 423.906 kb on - strand, within AO353_01995at 423.906 kb on - strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.939 kb on + strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 423.940 kb on - strand, within AO353_01995at 424.068 kb on - strand, within AO353_01995at 424.075 kb on + strand, within AO353_01995at 424.075 kb on + strand, within AO353_01995at 424.076 kb on - strand, within AO353_01995at 424.076 kb on - strand, within AO353_01995at 424.102 kb on + strand, within AO353_01995at 424.102 kb on + strand, within AO353_01995at 424.103 kb on - strand, within AO353_01995at 424.112 kb on - strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.181 kb on + strand, within AO353_01995at 424.182 kb on - strand, within AO353_01995at 424.182 kb on - strand, within AO353_01995at 424.182 kb on - strand, within AO353_01995at 424.184 kb on + strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.185 kb on - strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.276 kb on + strand, within AO353_01995at 424.277 kb on - strand, within AO353_01995at 424.277 kb on - strand, within AO353_01995at 424.277 kb on - strand, within AO353_01995at 424.277 kb on - strand, within AO353_01995at 424.277 kb on - strand, within AO353_01995at 424.299 kb on + strandat 424.299 kb on + strand, within AO353_01995at 424.638 kb on + strand, within AO353_01995at 424.741 kb on + strand, within AO353_01995at 424.741 kb on + strand, within AO353_01995at 424.741 kb on + strand, within AO353_01995at 424.791 kb on + strand, within AO353_01995at 424.971 kb on + strand, within AO353_01995at 424.971 kb on + strand, within AO353_01995at 424.977 kb on + strand, within AO353_01995at 424.977 kb on + strand, within AO353_01995at 424.977 kb on + strand, within AO353_01995at 424.992 kb on + strand, within AO353_01995at 424.992 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.117 kb on + strand, within AO353_01995at 425.214 kb on + strand, within AO353_01995at 425.219 kb on + strand, within AO353_01995at 425.219 kb on + strand, within AO353_01995at 425.219 kb on + strand, within AO353_01995at 425.259 kb on + strand, within AO353_01995at 425.259 kb on + strand, within AO353_01995at 425.259 kb on + strand, within AO353_01995at 425.273 kb on + strand, within AO353_01995at 425.273 kb on + strand, within AO353_01995at 425.310 kb on + strand, within AO353_01995at 425.320 kb on + strand, within AO353_01995at 425.404 kb on + strand, within AO353_01995at 425.404 kb on + strand, within AO353_01995at 425.426 kb on + strand, within AO353_01995at 425.521 kb on + strand, within AO353_01995at 425.789 kb on + strandat 426.354 kb on - strandat 426.354 kb on - strandat 426.598 kb on - strand, within AO353_02000at 426.749 kb on - strand, within AO353_02000at 426.749 kb on - strand, within AO353_02000at 426.751 kb on - strand, within AO353_02000at 426.868 kb on - strand, within AO353_02000at 426.911 kb on - strand, within AO353_02000at 426.957 kb on - strand, within AO353_02000at 426.961 kb on - strand, within AO353_02000at 426.988 kb on - strand, within AO353_02000at 427.159 kb on - strand, within AO353_02000

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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421,664 - AO353_01990 0.24 +1.6
421,664 - AO353_01990 0.24 +2.9
421,674 + AO353_01990 0.25 +2.2
421,674 + AO353_01990 0.25 -1.1
421,708 - AO353_01990 0.28 +1.2
421,713 - AO353_01990 0.28 +0.3
421,756 + AO353_01990 0.32 +2.9
421,757 - AO353_01990 0.32 -0.4
421,758 + AO353_01990 0.32 +1.4
421,820 - AO353_01990 0.38 +1.9
421,895 + AO353_01990 0.44 +0.5
421,941 - AO353_01990 0.49 +1.3
421,982 - AO353_01990 0.52 +0.3
422,002 + AO353_01990 0.54 +1.4
422,002 + AO353_01990 0.54 -1.7
422,002 + AO353_01990 0.54 +2.7
422,003 - AO353_01990 0.54 +2.0
422,003 - AO353_01990 0.54 +1.1
422,027 + AO353_01990 0.56 +0.9
422,134 + AO353_01990 0.66 +1.2
422,258 - AO353_01990 0.77 +0.9
422,315 + AO353_01990 0.82 -0.1
422,315 + AO353_01990 0.82 +2.0
422,315 + AO353_01990 0.82 +0.4
422,315 + AO353_01990 0.82 +2.3
422,316 - AO353_01990 0.82 +0.4
422,316 - AO353_01990 0.82 +0.5
422,316 - AO353_01990 0.82 +0.3
422,316 - AO353_01990 0.82 +1.5
422,316 - AO353_01990 0.82 +2.9
422,372 - AO353_01990 0.87 +0.6
422,372 - AO353_01990 0.87 -0.8
422,372 - AO353_01990 0.87 +1.7
422,470 + +1.9
422,471 - +0.4
422,471 - -0.1
422,512 + +0.9
422,513 - +1.0
422,594 + +0.7
422,631 + +0.9
422,683 + +2.4
422,713 + +1.9
422,713 + +1.0
422,713 + +1.4
422,717 + +0.9
422,717 + +0.4
422,718 - +1.4
422,829 - +0.7
422,854 + +3.7
422,854 + +1.6
422,854 + -1.0
422,855 - -0.7
422,884 - +1.2
422,910 - +1.9
422,910 - +2.3
423,081 + AO353_01995 0.12 +0.9
423,081 + AO353_01995 0.12 +0.3
423,142 + AO353_01995 0.14 +0.6
423,142 + AO353_01995 0.14 +2.2
423,142 + AO353_01995 0.14 -1.9
423,142 + AO353_01995 0.14 +1.0
423,142 + AO353_01995 0.14 +1.9
423,142 + AO353_01995 0.14 +1.7
423,143 - AO353_01995 0.14 +0.5
423,143 - AO353_01995 0.14 +0.9
423,143 - AO353_01995 0.14 +0.4
423,143 - AO353_01995 0.14 -0.4
423,143 - AO353_01995 0.14 +1.9
423,143 - AO353_01995 0.14 +0.3
423,143 - AO353_01995 0.14 +0.7
423,143 - AO353_01995 0.14 +0.7
423,281 + AO353_01995 0.18 +1.6
423,282 - AO353_01995 0.18 -1.1
423,282 - AO353_01995 0.18 +0.7
423,282 - AO353_01995 0.18 +1.1
423,295 + AO353_01995 0.18 -2.3
423,295 + AO353_01995 0.18 +1.9
423,295 + AO353_01995 0.18 +0.2
423,309 + AO353_01995 0.18 -0.5
423,309 + AO353_01995 0.18 +2.3
423,310 - AO353_01995 0.18 +0.1
423,359 + AO353_01995 0.20 +2.1
423,525 + AO353_01995 0.24 -0.5
423,586 + AO353_01995 0.26 +1.0
423,586 + AO353_01995 0.26 +0.9
423,587 - AO353_01995 0.26 -1.7
423,587 - AO353_01995 0.26 +0.5
423,588 + AO353_01995 0.26 +0.4
423,589 - AO353_01995 0.26 +2.2
423,589 - AO353_01995 0.26 +3.4
423,589 - AO353_01995 0.26 +0.6
423,600 + AO353_01995 0.26 +0.3
423,601 - AO353_01995 0.26 +0.9
423,601 - AO353_01995 0.26 +1.2
423,602 + AO353_01995 0.26 -0.1
423,677 + AO353_01995 0.28 +1.0
423,682 - AO353_01995 0.28 +0.1
423,682 - AO353_01995 0.28 +0.9
423,682 - AO353_01995 0.28 +0.9
423,682 - AO353_01995 0.28 +3.2
423,705 + AO353_01995 0.29 -1.1
423,705 + AO353_01995 0.29 +2.1
423,706 - AO353_01995 0.29 -0.4
423,748 - AO353_01995 0.30 +0.3
423,748 - AO353_01995 0.30 +1.4
423,748 - AO353_01995 0.30 +1.2
423,751 + AO353_01995 0.30 +1.2
423,751 + AO353_01995 0.30 -0.1
423,752 - AO353_01995 0.30 +0.1
423,752 - AO353_01995 0.30 +0.6
423,793 + AO353_01995 0.31 +0.5
423,794 - AO353_01995 0.31 +0.2
423,794 - AO353_01995 0.31 +1.6
423,862 + AO353_01995 0.33 +2.2
423,862 + AO353_01995 0.33 +2.2
423,863 - AO353_01995 0.33 +0.3
423,881 - AO353_01995 0.34 -0.7
423,889 + AO353_01995 0.34 +2.4
423,893 + AO353_01995 0.34 -0.3
423,894 - AO353_01995 0.34 +1.5
423,901 + AO353_01995 0.34 +1.6
423,902 - AO353_01995 0.34 +0.5
423,906 - AO353_01995 0.34 -1.7
423,906 - AO353_01995 0.34 +1.9
423,939 + AO353_01995 0.35 -0.3
423,939 + AO353_01995 0.35 +0.6
423,939 + AO353_01995 0.35 +0.5
423,939 + AO353_01995 0.35 +0.9
423,939 + AO353_01995 0.35 +0.9
423,939 + AO353_01995 0.35 +0.9
423,939 + AO353_01995 0.35 +0.4
423,940 - AO353_01995 0.35 +1.4
423,940 - AO353_01995 0.35 -0.7
423,940 - AO353_01995 0.35 +2.9
423,940 - AO353_01995 0.35 +0.9
423,940 - AO353_01995 0.35 +1.5
423,940 - AO353_01995 0.35 +2.9
423,940 - AO353_01995 0.35 +0.6
424,068 - AO353_01995 0.39 -0.1
424,075 + AO353_01995 0.39 +0.7
424,075 + AO353_01995 0.39 +1.4
424,076 - AO353_01995 0.39 +1.8
424,076 - AO353_01995 0.39 +2.4
424,102 + AO353_01995 0.40 +0.9
424,102 + AO353_01995 0.40 -2.6
424,103 - AO353_01995 0.40 +0.1
424,112 - AO353_01995 0.40 +2.7
424,181 + AO353_01995 0.42 +0.7
424,181 + AO353_01995 0.42 +0.4
424,181 + AO353_01995 0.42 +1.2
424,181 + AO353_01995 0.42 +0.8
424,181 + AO353_01995 0.42 -1.3
424,181 + AO353_01995 0.42 +3.2
424,182 - AO353_01995 0.42 +0.1
424,182 - AO353_01995 0.42 +0.3
424,182 - AO353_01995 0.42 +0.5
424,184 + AO353_01995 0.42 +1.7
424,185 - AO353_01995 0.42 +1.1
424,185 - AO353_01995 0.42 +0.3
424,185 - AO353_01995 0.42 +0.1
424,185 - AO353_01995 0.42 -0.1
424,185 - AO353_01995 0.42 +1.9
424,185 - AO353_01995 0.42 +0.4
424,276 + AO353_01995 0.44 +1.9
424,276 + AO353_01995 0.44 +1.9
424,276 + AO353_01995 0.44 +0.9
424,276 + AO353_01995 0.44 +1.4
424,276 + AO353_01995 0.44 +1.9
424,276 + AO353_01995 0.44 +2.0
424,276 + AO353_01995 0.44 +0.3
424,277 - AO353_01995 0.44 -1.1
424,277 - AO353_01995 0.44 +3.3
424,277 - AO353_01995 0.44 +2.0
424,277 - AO353_01995 0.44 +0.9
424,277 - AO353_01995 0.44 -0.5
424,299 + +0.9
424,299 + AO353_01995 0.45 +0.1
424,638 + AO353_01995 0.54 +1.2
424,741 + AO353_01995 0.57 +0.1
424,741 + AO353_01995 0.57 +1.4
424,741 + AO353_01995 0.57 +2.9
424,791 + AO353_01995 0.58 +1.5
424,971 + AO353_01995 0.63 +2.9
424,971 + AO353_01995 0.63 +3.3
424,977 + AO353_01995 0.63 +1.3
424,977 + AO353_01995 0.63 +1.9
424,977 + AO353_01995 0.63 +2.1
424,992 + AO353_01995 0.64 +0.3
424,992 + AO353_01995 0.64 +1.2
425,117 + AO353_01995 0.67 -1.1
425,117 + AO353_01995 0.67 +1.8
425,117 + AO353_01995 0.67 +2.2
425,117 + AO353_01995 0.67 +1.1
425,117 + AO353_01995 0.67 -0.0
425,117 + AO353_01995 0.67 +0.9
425,214 + AO353_01995 0.70 +2.8
425,219 + AO353_01995 0.70 +2.4
425,219 + AO353_01995 0.70 +1.3
425,219 + AO353_01995 0.70 +0.7
425,259 + AO353_01995 0.71 +1.4
425,259 + AO353_01995 0.71 -1.6
425,259 + AO353_01995 0.71 +1.2
425,273 + AO353_01995 0.71 -1.6
425,273 + AO353_01995 0.71 +2.4
425,310 + AO353_01995 0.72 +1.3
425,320 + AO353_01995 0.73 +3.4
425,404 + AO353_01995 0.75 -0.1
425,404 + AO353_01995 0.75 +1.8
425,426 + AO353_01995 0.75 -0.1
425,521 + AO353_01995 0.78 +1.4
425,789 + +0.9
426,354 - +0.9
426,354 - +1.1
426,598 - AO353_02000 0.19 +2.1
426,749 - AO353_02000 0.31 -1.7
426,749 - AO353_02000 0.31 +0.1
426,751 - AO353_02000 0.31 +0.5
426,868 - AO353_02000 0.40 +1.2
426,911 - AO353_02000 0.43 +0.5
426,957 - AO353_02000 0.47 -0.1
426,961 - AO353_02000 0.47 +3.2
426,988 - AO353_02000 0.49 -0.1
427,159 - AO353_02000 0.63 +0.3

Or see this region's nucleotide sequence