Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01265

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01255 and AO353_01260 are separated by 69 nucleotidesAO353_01260 and AO353_01265 are separated by 60 nucleotidesAO353_01265 and AO353_01270 are separated by 9 nucleotides AO353_01255: AO353_01255 - hypothetical protein, at 275,360 to 276,235 _01255 AO353_01260: AO353_01260 - transcriptional regulator, at 276,305 to 277,099 _01260 AO353_01265: AO353_01265 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 277,160 to 277,789 _01265 AO353_01270: AO353_01270 - 2-dehydro-3-deoxygalactonokinase, at 277,799 to 278,794 _01270 Position (kb) 277 278Strain fitness (log2 ratio) -2 -1 0 1 2 3at 276.168 kb on - strandat 276.173 kb on + strandat 276.173 kb on + strandat 276.173 kb on + strandat 276.174 kb on - strandat 276.174 kb on - strandat 276.174 kb on - strandat 276.174 kb on - strandat 276.174 kb on - strandat 276.215 kb on + strandat 276.244 kb on + strandat 276.245 kb on - strandat 276.306 kb on + strandat 276.306 kb on + strandat 276.306 kb on + strandat 276.306 kb on + strandat 276.306 kb on + strandat 276.306 kb on + strandat 276.306 kb on + strandat 276.307 kb on - strandat 276.307 kb on - strandat 276.307 kb on - strandat 276.307 kb on - strandat 276.308 kb on + strandat 276.308 kb on + strandat 276.308 kb on + strandat 276.308 kb on + strandat 276.308 kb on + strandat 276.309 kb on - strandat 276.320 kb on + strandat 276.320 kb on + strandat 276.321 kb on - strandat 276.321 kb on - strandat 276.364 kb on + strandat 276.364 kb on + strandat 276.364 kb on + strandat 276.364 kb on + strandat 276.365 kb on - strandat 276.365 kb on - strandat 276.365 kb on - strandat 276.365 kb on - strandat 276.365 kb on - strandat 276.365 kb on - strandat 276.393 kb on + strand, within AO353_01260at 276.393 kb on + strand, within AO353_01260at 276.393 kb on + strand, within AO353_01260at 276.393 kb on + strand, within AO353_01260at 276.393 kb on + strand, within AO353_01260at 276.394 kb on - strand, within AO353_01260at 276.394 kb on - strand, within AO353_01260at 276.394 kb on - strand, within AO353_01260at 276.504 kb on + strand, within AO353_01260at 276.505 kb on - strand, within AO353_01260at 276.519 kb on + strand, within AO353_01260at 276.519 kb on + strand, within AO353_01260at 276.519 kb on + strand, within AO353_01260at 276.519 kb on + strand, within AO353_01260at 276.519 kb on + strand, within AO353_01260at 276.519 kb on + strand, within AO353_01260at 276.519 kb on + strand, within AO353_01260at 276.520 kb on - strand, within AO353_01260at 276.520 kb on - strand, within AO353_01260at 276.520 kb on - strand, within AO353_01260at 276.520 kb on - strand, within AO353_01260at 276.520 kb on - strand, within AO353_01260at 276.520 kb on - strand, within AO353_01260at 276.520 kb on - strand, within AO353_01260at 276.744 kb on + strand, within AO353_01260at 276.744 kb on + strand, within AO353_01260at 276.744 kb on + strand, within AO353_01260at 276.744 kb on + strand, within AO353_01260at 276.745 kb on - strand, within AO353_01260at 276.745 kb on - strand, within AO353_01260at 276.745 kb on - strand, within AO353_01260at 276.745 kb on - strand, within AO353_01260at 276.745 kb on - strand, within AO353_01260at 276.745 kb on - strand, within AO353_01260at 276.745 kb on - strand, within AO353_01260at 276.816 kb on + strand, within AO353_01260at 276.816 kb on + strand, within AO353_01260at 276.817 kb on - strand, within AO353_01260at 276.895 kb on - strand, within AO353_01260at 276.978 kb on - strand, within AO353_01260at 277.099 kb on + strandat 277.099 kb on + strandat 277.099 kb on + strandat 277.099 kb on + strandat 277.100 kb on - strandat 277.100 kb on - strandat 277.100 kb on - strandat 277.100 kb on - strandat 277.100 kb on - strandat 277.139 kb on - strandat 277.161 kb on + strandat 277.161 kb on + strandat 277.161 kb on + strandat 277.161 kb on + strandat 277.162 kb on - strandat 277.162 kb on - strandat 277.162 kb on - strandat 277.162 kb on - strandat 277.162 kb on - strandat 277.162 kb on - strandat 277.197 kb on + strandat 277.197 kb on + strandat 277.197 kb on + strandat 277.198 kb on - strandat 277.198 kb on - strandat 277.198 kb on - strandat 277.198 kb on - strandat 277.198 kb on - strandat 277.198 kb on - strandat 277.198 kb on - strandat 277.352 kb on + strand, within AO353_01265at 277.352 kb on + strand, within AO353_01265at 277.353 kb on - strand, within AO353_01265at 277.353 kb on - strand, within AO353_01265at 277.476 kb on + strand, within AO353_01265at 277.477 kb on - strand, within AO353_01265at 277.477 kb on - strand, within AO353_01265at 277.477 kb on - strand, within AO353_01265at 277.477 kb on - strand, within AO353_01265at 277.477 kb on - strand, within AO353_01265at 277.477 kb on - strand, within AO353_01265at 277.477 kb on - strand, within AO353_01265at 277.648 kb on - strand, within AO353_01265at 277.698 kb on + strand, within AO353_01265at 277.698 kb on + strand, within AO353_01265at 277.699 kb on - strand, within AO353_01265at 277.699 kb on - strand, within AO353_01265at 277.800 kb on + strandat 277.801 kb on - strandat 277.913 kb on - strand, within AO353_01270at 278.047 kb on - strand, within AO353_01270at 278.047 kb on - strand, within AO353_01270at 278.047 kb on - strand, within AO353_01270at 278.440 kb on + strand, within AO353_01270at 278.440 kb on + strand, within AO353_01270at 278.520 kb on + strand, within AO353_01270at 278.521 kb on - strand, within AO353_01270at 278.742 kb on + strandat 278.742 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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276,168 - -1.4
276,173 + -0.5
276,173 + -0.9
276,173 + +1.3
276,174 - +0.3
276,174 - +0.3
276,174 - -1.0
276,174 - +0.4
276,174 - -0.3
276,215 + +0.8
276,244 + -0.1
276,245 - +1.1
276,306 + -0.5
276,306 + -0.7
276,306 + +0.0
276,306 + +0.8
276,306 + +1.2
276,306 + -1.2
276,306 + +1.3
276,307 - -1.7
276,307 - -0.0
276,307 - -0.2
276,307 - +0.7
276,308 + +0.3
276,308 + +0.3
276,308 + -1.5
276,308 + +0.1
276,308 + -0.9
276,309 - +0.8
276,320 + +1.4
276,320 + +1.8
276,321 - -1.0
276,321 - -0.7
276,364 + +0.7
276,364 + -0.8
276,364 + +1.0
276,364 + -2.2
276,365 - +0.8
276,365 - +0.6
276,365 - -1.0
276,365 - +0.4
276,365 - +0.8
276,365 - +2.0
276,393 + AO353_01260 0.11 +1.2
276,393 + AO353_01260 0.11 +1.5
276,393 + AO353_01260 0.11 +1.8
276,393 + AO353_01260 0.11 -2.2
276,393 + AO353_01260 0.11 -0.6
276,394 - AO353_01260 0.11 -1.2
276,394 - AO353_01260 0.11 +0.4
276,394 - AO353_01260 0.11 -0.7
276,504 + AO353_01260 0.25 +0.1
276,505 - AO353_01260 0.25 -0.1
276,519 + AO353_01260 0.27 -0.2
276,519 + AO353_01260 0.27 -0.5
276,519 + AO353_01260 0.27 +0.5
276,519 + AO353_01260 0.27 +1.8
276,519 + AO353_01260 0.27 +0.0
276,519 + AO353_01260 0.27 +0.6
276,519 + AO353_01260 0.27 -0.7
276,520 - AO353_01260 0.27 +0.5
276,520 - AO353_01260 0.27 -0.2
276,520 - AO353_01260 0.27 -1.2
276,520 - AO353_01260 0.27 -0.6
276,520 - AO353_01260 0.27 +0.8
276,520 - AO353_01260 0.27 +0.8
276,520 - AO353_01260 0.27 -1.5
276,744 + AO353_01260 0.55 +0.8
276,744 + AO353_01260 0.55 -0.2
276,744 + AO353_01260 0.55 +0.4
276,744 + AO353_01260 0.55 +0.1
276,745 - AO353_01260 0.55 +0.3
276,745 - AO353_01260 0.55 -0.3
276,745 - AO353_01260 0.55 -1.2
276,745 - AO353_01260 0.55 +0.8
276,745 - AO353_01260 0.55 +0.1
276,745 - AO353_01260 0.55 +0.1
276,745 - AO353_01260 0.55 +1.6
276,816 + AO353_01260 0.64 +0.1
276,816 + AO353_01260 0.64 -1.9
276,817 - AO353_01260 0.64 -0.7
276,895 - AO353_01260 0.74 +0.6
276,978 - AO353_01260 0.85 -0.3
277,099 + +1.3
277,099 + +1.3
277,099 + -0.6
277,099 + -0.3
277,100 - -0.9
277,100 - -0.5
277,100 - +0.4
277,100 - +1.4
277,100 - +0.1
277,139 - +0.4
277,161 + -0.8
277,161 + +0.2
277,161 + +0.2
277,161 + -0.0
277,162 - +1.3
277,162 - -2.0
277,162 - +0.4
277,162 - +1.3
277,162 - +1.6
277,162 - -0.2
277,197 + +0.8
277,197 + +1.8
277,197 + +1.2
277,198 - -1.3
277,198 - +1.0
277,198 - -0.2
277,198 - -0.2
277,198 - -0.2
277,198 - +2.8
277,198 - +0.8
277,352 + AO353_01265 0.30 +1.3
277,352 + AO353_01265 0.30 -0.7
277,353 - AO353_01265 0.31 -0.4
277,353 - AO353_01265 0.31 -0.0
277,476 + AO353_01265 0.50 +2.0
277,477 - AO353_01265 0.50 +2.0
277,477 - AO353_01265 0.50 +1.3
277,477 - AO353_01265 0.50 +0.5
277,477 - AO353_01265 0.50 +0.1
277,477 - AO353_01265 0.50 +1.6
277,477 - AO353_01265 0.50 -1.3
277,477 - AO353_01265 0.50 +1.6
277,648 - AO353_01265 0.77 -0.5
277,698 + AO353_01265 0.85 +0.9
277,698 + AO353_01265 0.85 +0.4
277,699 - AO353_01265 0.86 +1.1
277,699 - AO353_01265 0.86 -2.2
277,800 + +0.6
277,801 - -0.6
277,913 - AO353_01270 0.11 +2.2
278,047 - AO353_01270 0.25 -0.2
278,047 - AO353_01270 0.25 -0.5
278,047 - AO353_01270 0.25 +0.1
278,440 + AO353_01270 0.64 +0.1
278,440 + AO353_01270 0.64 -0.6
278,520 + AO353_01270 0.72 -0.6
278,521 - AO353_01270 0.72 +0.4
278,742 + -1.2
278,742 + -1.0

Or see this region's nucleotide sequence