Experiment: Gentamicin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01005 and AO353_01010 are separated by 309 nucleotides AO353_01010 and AO353_01015 are separated by 52 nucleotides AO353_01015 and AO353_01020 overlap by 2 nucleotides AO353_01020 and AO353_01025 are separated by 83 nucleotides
AO353_01005: AO353_01005 - hypothetical protein, at 223,780 to 224,115
_01005
AO353_01010: AO353_01010 - cell envelope protein SmpA, at 224,425 to 224,787
_01010
AO353_01015: AO353_01015 - hypothetical protein, at 224,840 to 225,019
_01015
AO353_01020: AO353_01020 - hypothetical protein, at 225,018 to 225,404
_01020
AO353_01025: AO353_01025 - hypothetical protein, at 225,488 to 225,685
_01025
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1
2 at 223.841 kb on + strand, within AO353_01005 at 223.841 kb on + strand, within AO353_01005 at 223.841 kb on + strand, within AO353_01005 at 223.841 kb on + strand, within AO353_01005 at 223.841 kb on + strand, within AO353_01005 at 223.841 kb on + strand, within AO353_01005 at 223.849 kb on + strand, within AO353_01005 at 223.868 kb on + strand, within AO353_01005 at 223.869 kb on - strand, within AO353_01005 at 223.869 kb on - strand, within AO353_01005 at 223.869 kb on - strand, within AO353_01005 at 223.917 kb on + strand, within AO353_01005 at 223.917 kb on + strand, within AO353_01005 at 223.917 kb on + strand, within AO353_01005 at 223.917 kb on + strand, within AO353_01005 at 223.941 kb on + strand, within AO353_01005 at 223.941 kb on + strand, within AO353_01005 at 223.941 kb on + strand, within AO353_01005 at 223.942 kb on - strand, within AO353_01005 at 223.942 kb on - strand, within AO353_01005 at 223.942 kb on - strand, within AO353_01005 at 223.956 kb on + strand, within AO353_01005 at 223.957 kb on - strand, within AO353_01005 at 223.957 kb on - strand, within AO353_01005 at 223.957 kb on - strand, within AO353_01005 at 223.957 kb on - strand, within AO353_01005 at 223.957 kb on - strand, within AO353_01005 at 223.997 kb on + strand, within AO353_01005 at 223.997 kb on + strand, within AO353_01005 at 223.997 kb on + strand, within AO353_01005 at 223.998 kb on - strand, within AO353_01005 at 223.998 kb on - strand, within AO353_01005 at 223.998 kb on - strand, within AO353_01005 at 224.101 kb on + strand at 224.101 kb on + strand at 224.101 kb on + strand at 224.102 kb on - strand at 224.102 kb on - strand at 224.115 kb on + strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.131 kb on + strand at 224.131 kb on + strand at 224.147 kb on + strand at 224.147 kb on + strand at 224.148 kb on - strand at 224.148 kb on - strand at 224.148 kb on - strand at 224.148 kb on - strand at 224.162 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.176 kb on - strand at 224.176 kb on - strand at 224.179 kb on + strand at 224.179 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.200 kb on + strand at 224.201 kb on - strand at 224.201 kb on - strand at 224.216 kb on - strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.373 kb on + strand at 224.373 kb on + strand at 224.374 kb on - strand at 224.439 kb on - strand at 224.525 kb on + strand, within AO353_01010 at 224.526 kb on - strand, within AO353_01010 at 224.526 kb on - strand, within AO353_01010 at 224.576 kb on + strand, within AO353_01010 at 224.576 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.700 kb on + strand, within AO353_01010 at 224.700 kb on + strand, within AO353_01010 at 224.701 kb on - strand, within AO353_01010 at 224.701 kb on - strand, within AO353_01010 at 224.701 kb on - strand, within AO353_01010 at 224.785 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.848 kb on - strand at 224.848 kb on - strand at 224.848 kb on - strand at 224.848 kb on - strand at 224.893 kb on + strand, within AO353_01015 at 224.894 kb on - strand, within AO353_01015 at 224.981 kb on + strand, within AO353_01015 at 224.982 kb on - strand, within AO353_01015 at 225.023 kb on + strand at 225.024 kb on - strand at 225.029 kb on - strand at 225.037 kb on + strand at 225.038 kb on - strand at 225.069 kb on + strand, within AO353_01020 at 225.069 kb on + strand, within AO353_01020 at 225.069 kb on + strand, within AO353_01020 at 225.119 kb on + strand, within AO353_01020 at 225.120 kb on - strand, within AO353_01020 at 225.120 kb on - strand, within AO353_01020 at 225.160 kb on + strand, within AO353_01020 at 225.161 kb on - strand, within AO353_01020 at 225.342 kb on + strand, within AO353_01020 at 225.342 kb on + strand, within AO353_01020 at 225.342 kb on + strand, within AO353_01020 at 225.343 kb on - strand, within AO353_01020 at 225.686 kb on - strand at 225.745 kb on + strand at 225.751 kb on - strand at 225.751 kb on - strand at 225.767 kb on + strand at 225.868 kb on - strand at 225.900 kb on + strand at 225.946 kb on + strand at 225.946 kb on + strand at 225.946 kb on + strand at 225.946 kb on + strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.966 kb on + strand at 225.967 kb on - strand at 225.967 kb on - strand at 225.973 kb on + strand at 226.005 kb on + strand at 226.006 kb on - strand at 226.006 kb on - strand at 226.006 kb on - strand at 226.006 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml remove 223,841 + AO353_01005 0.18 +0.0 223,841 + AO353_01005 0.18 -2.1 223,841 + AO353_01005 0.18 -0.1 223,841 + AO353_01005 0.18 +0.7 223,841 + AO353_01005 0.18 +1.7 223,841 + AO353_01005 0.18 -0.1 223,849 + AO353_01005 0.21 -0.1 223,868 + AO353_01005 0.26 +0.4 223,869 - AO353_01005 0.26 -0.6 223,869 - AO353_01005 0.26 +0.4 223,869 - AO353_01005 0.26 -1.3 223,917 + AO353_01005 0.41 +0.7 223,917 + AO353_01005 0.41 -0.1 223,917 + AO353_01005 0.41 +0.1 223,917 + AO353_01005 0.41 -0.1 223,941 + AO353_01005 0.48 -1.0 223,941 + AO353_01005 0.48 +0.5 223,941 + AO353_01005 0.48 -0.9 223,942 - AO353_01005 0.48 -0.1 223,942 - AO353_01005 0.48 -0.1 223,942 - AO353_01005 0.48 -0.1 223,956 + AO353_01005 0.52 -1.1 223,957 - AO353_01005 0.53 +1.4 223,957 - AO353_01005 0.53 -0.4 223,957 - AO353_01005 0.53 +1.4 223,957 - AO353_01005 0.53 +0.6 223,957 - AO353_01005 0.53 +0.3 223,997 + AO353_01005 0.65 +2.1 223,997 + AO353_01005 0.65 -0.5 223,997 + AO353_01005 0.65 -0.5 223,998 - AO353_01005 0.65 +0.9 223,998 - AO353_01005 0.65 +1.1 223,998 - AO353_01005 0.65 +0.9 224,101 + +0.7 224,101 + +0.5 224,101 + +1.2 224,102 - -1.0 224,102 - +0.3 224,115 + -0.1 224,116 - -0.7 224,116 - +0.9 224,116 - -0.1 224,116 - +0.5 224,116 - +1.2 224,116 - -1.1 224,116 - +0.1 224,116 - +0.4 224,131 + -0.3 224,131 + -0.5 224,147 + +0.9 224,147 + +0.0 224,148 - +0.0 224,148 - -0.5 224,148 - -1.0 224,148 - +1.1 224,162 + +0.1 224,175 + -1.3 224,175 + +0.9 224,175 + +0.4 224,175 + +0.7 224,175 + +0.6 224,175 + -0.7 224,176 - +0.9 224,176 - -0.1 224,179 + +0.5 224,179 + -0.6 224,189 + -0.7 224,189 + +1.9 224,189 + -0.7 224,189 + +0.6 224,189 + +0.0 224,189 + +0.4 224,189 + +1.1 224,190 - -1.7 224,190 - +0.6 224,190 - -2.1 224,190 - +0.3 224,190 - +0.3 224,200 + -1.1 224,201 - -0.2 224,201 - -1.0 224,216 - -0.3 224,339 - +0.9 224,339 - -0.1 224,339 - +0.9 224,339 - -0.6 224,373 + +0.9 224,373 + -0.7 224,374 - +0.9 224,439 - -1.0 224,525 + AO353_01010 0.28 -0.7 224,526 - AO353_01010 0.28 -2.0 224,526 - AO353_01010 0.28 -0.7 224,576 + AO353_01010 0.42 +0.3 224,576 + AO353_01010 0.42 -0.7 224,620 + AO353_01010 0.54 +0.3 224,620 + AO353_01010 0.54 +0.3 224,620 + AO353_01010 0.54 +0.9 224,620 + AO353_01010 0.54 -2.0 224,621 - AO353_01010 0.54 -0.6 224,621 - AO353_01010 0.54 -0.4 224,621 - AO353_01010 0.54 +0.1 224,621 - AO353_01010 0.54 -0.6 224,621 - AO353_01010 0.54 +0.5 224,621 - AO353_01010 0.54 +1.2 224,621 - AO353_01010 0.54 -0.6 224,691 + AO353_01010 0.73 +2.0 224,691 + AO353_01010 0.73 +0.1 224,691 + AO353_01010 0.73 -0.3 224,691 + AO353_01010 0.73 +0.1 224,691 + AO353_01010 0.73 -0.6 224,700 + AO353_01010 0.76 -0.4 224,700 + AO353_01010 0.76 +0.6 224,701 - AO353_01010 0.76 +0.1 224,701 - AO353_01010 0.76 +2.4 224,701 - AO353_01010 0.76 +0.9 224,785 + +1.1 224,790 + +0.6 224,790 + +0.3 224,790 + -0.5 224,790 + -1.1 224,790 + +0.3 224,790 + +0.1 224,791 - -0.1 224,791 - -1.1 224,791 - +0.9 224,791 - +0.3 224,791 - -0.7 224,818 + +0.1 224,818 + +0.3 224,818 + -1.1 224,818 + +1.9 224,818 + +0.3 224,818 + -1.5 224,818 + -0.1 224,818 + +0.9 224,818 + -0.6 224,818 + +0.8 224,818 + +1.7 224,818 + -0.7 224,818 + -1.5 224,818 + -1.1 224,819 - -0.1 224,819 - +0.3 224,819 - +0.6 224,819 - -1.1 224,819 - +0.7 224,848 - +1.4 224,848 - -0.6 224,848 - -1.1 224,848 - -0.5 224,893 + AO353_01015 0.29 +1.4 224,894 - AO353_01015 0.30 +0.7 224,981 + AO353_01015 0.78 -0.6 224,982 - AO353_01015 0.79 +0.4 225,023 + -0.6 225,024 - +1.2 225,029 - +0.9 225,037 + -0.1 225,038 - -0.7 225,069 + AO353_01020 0.13 +0.1 225,069 + AO353_01020 0.13 +2.1 225,069 + AO353_01020 0.13 -1.5 225,119 + AO353_01020 0.26 +2.2 225,120 - AO353_01020 0.26 -0.5 225,120 - AO353_01020 0.26 -0.1 225,160 + AO353_01020 0.37 +0.9 225,161 - AO353_01020 0.37 -0.7 225,342 + AO353_01020 0.84 +1.3 225,342 + AO353_01020 0.84 +0.0 225,342 + AO353_01020 0.84 +0.1 225,343 - AO353_01020 0.84 +1.1 225,686 - +1.4 225,745 + +0.6 225,751 - +0.5 225,751 - +0.1 225,767 + +0.3 225,868 - -0.1 225,900 + -0.7 225,946 + -0.3 225,946 + -0.4 225,946 + +0.1 225,946 + +0.3 225,947 - +0.3 225,947 - +0.7 225,947 - -1.8 225,947 - -1.4 225,947 - -1.8 225,947 - -1.4 225,947 - -0.1 225,947 - +0.1 225,966 + +0.3 225,967 - -0.4 225,967 - -1.1 225,973 + +0.1 226,005 + -0.5 226,006 - +0.0 226,006 - -0.7 226,006 - -0.1 226,006 - -1.3
Or see this region's nucleotide sequence