Experiment: Gentamicin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00915 and AO353_00920 overlap by 1 nucleotides AO353_00920 and AO353_00925 are separated by 262 nucleotides
AO353_00915: AO353_00915 - hypothetical protein, at 207,777 to 209,309
_00915
AO353_00920: AO353_00920 - alpha-L-glutamate ligase, at 209,309 to 210,295
_00920
AO353_00925: AO353_00925 - aminodeoxychorismate synthase component I, at 210,558 to 211,901
_00925
Position (kb) 209
210
211 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 208.390 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.461 kb on - strand, within AO353_00915 at 208.461 kb on - strand, within AO353_00915 at 208.485 kb on + strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.655 kb on + strand, within AO353_00915 at 208.655 kb on + strand, within AO353_00915 at 208.677 kb on + strand, within AO353_00915 at 208.687 kb on - strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.857 kb on - strand, within AO353_00915 at 208.866 kb on - strand, within AO353_00915 at 208.902 kb on + strand, within AO353_00915 at 208.902 kb on + strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.997 kb on + strand, within AO353_00915 at 208.998 kb on - strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.181 kb on + strand at 209.181 kb on + strand at 209.307 kb on + strand at 209.308 kb on - strand at 209.384 kb on + strand at 209.384 kb on + strand at 209.384 kb on + strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.396 kb on + strand at 209.396 kb on + strand at 209.396 kb on + strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.486 kb on + strand, within AO353_00920 at 209.545 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.700 kb on - strand, within AO353_00920 at 209.777 kb on + strand, within AO353_00920 at 209.777 kb on + strand, within AO353_00920 at 209.778 kb on - strand, within AO353_00920 at 209.778 kb on - strand, within AO353_00920 at 209.986 kb on - strand, within AO353_00920 at 209.986 kb on - strand, within AO353_00920 at 210.005 kb on + strand, within AO353_00920 at 210.005 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.042 kb on - strand, within AO353_00920 at 210.042 kb on - strand, within AO353_00920 at 210.063 kb on - strand, within AO353_00920 at 210.063 kb on - strand, within AO353_00920 at 210.294 kb on - strand at 210.294 kb on - strand at 210.343 kb on + strand at 210.343 kb on + strand at 210.364 kb on + strand at 210.364 kb on + strand at 210.364 kb on + strand at 210.364 kb on + strand at 210.364 kb on + strand at 210.364 kb on + strand at 210.364 kb on + strand at 210.364 kb on + strand at 210.364 kb on + strand at 210.364 kb on + strand at 210.364 kb on + strand at 210.364 kb on + strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.365 kb on - strand at 210.390 kb on + strand at 210.391 kb on - strand at 210.471 kb on + strand at 210.471 kb on + strand at 210.471 kb on + strand at 210.471 kb on + strand at 210.471 kb on + strand at 210.471 kb on + strand at 210.471 kb on + strand at 210.471 kb on + strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.472 kb on - strand at 210.494 kb on - strand at 210.516 kb on + strand at 210.516 kb on + strand at 210.516 kb on + strand at 210.517 kb on - strand at 210.517 kb on - strand at 210.517 kb on - strand at 210.517 kb on - strand at 210.517 kb on - strand at 210.575 kb on - strand at 210.575 kb on - strand at 210.575 kb on - strand at 210.575 kb on - strand at 210.575 kb on - strand at 210.643 kb on + strand at 210.643 kb on + strand at 210.644 kb on - strand at 210.644 kb on - strand at 210.644 kb on - strand at 210.644 kb on - strand at 210.684 kb on + strand at 210.684 kb on + strand at 210.684 kb on + strand at 210.684 kb on + strand at 210.685 kb on - strand at 210.817 kb on + strand, within AO353_00925 at 210.817 kb on + strand, within AO353_00925 at 210.817 kb on + strand, within AO353_00925 at 210.817 kb on + strand, within AO353_00925 at 210.818 kb on - strand, within AO353_00925 at 210.818 kb on - strand, within AO353_00925 at 210.844 kb on - strand, within AO353_00925 at 210.933 kb on + strand, within AO353_00925 at 210.933 kb on + strand, within AO353_00925 at 210.934 kb on - strand, within AO353_00925 at 210.934 kb on - strand, within AO353_00925 at 210.934 kb on - strand, within AO353_00925 at 211.110 kb on + strand, within AO353_00925 at 211.111 kb on - strand, within AO353_00925 at 211.140 kb on + strand, within AO353_00925 at 211.140 kb on + strand, within AO353_00925 at 211.140 kb on + strand, within AO353_00925 at 211.141 kb on - strand, within AO353_00925 at 211.141 kb on - strand, within AO353_00925 at 211.141 kb on - strand, within AO353_00925 at 211.141 kb on - strand, within AO353_00925 at 211.141 kb on - strand, within AO353_00925 at 211.141 kb on - strand, within AO353_00925 at 211.141 kb on - strand, within AO353_00925 at 211.141 kb on - strand, within AO353_00925 at 211.141 kb on - strand, within AO353_00925 at 211.141 kb on - strand, within AO353_00925 at 211.141 kb on - strand, within AO353_00925 at 211.161 kb on + strand, within AO353_00925 at 211.162 kb on - strand, within AO353_00925 at 211.162 kb on - strand, within AO353_00925
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml remove 208,390 + AO353_00915 0.40 +1.9 208,390 + AO353_00915 0.40 -0.4 208,390 + AO353_00915 0.40 +0.6 208,391 - AO353_00915 0.40 +2.4 208,391 - AO353_00915 0.40 +1.7 208,391 - AO353_00915 0.40 +0.9 208,391 - AO353_00915 0.40 +0.6 208,461 - AO353_00915 0.45 +0.3 208,461 - AO353_00915 0.45 +0.1 208,485 + AO353_00915 0.46 +1.3 208,486 - AO353_00915 0.46 +1.9 208,486 - AO353_00915 0.46 -0.4 208,486 - AO353_00915 0.46 +3.9 208,486 - AO353_00915 0.46 +2.0 208,486 - AO353_00915 0.46 +1.5 208,655 + AO353_00915 0.57 +1.4 208,655 + AO353_00915 0.57 +3.9 208,677 + AO353_00915 0.59 +0.5 208,687 - AO353_00915 0.59 +0.8 208,856 + AO353_00915 0.70 +0.7 208,856 + AO353_00915 0.70 +0.4 208,856 + AO353_00915 0.70 +0.3 208,856 + AO353_00915 0.70 +1.1 208,857 - AO353_00915 0.70 +0.9 208,866 - AO353_00915 0.71 +1.3 208,902 + AO353_00915 0.73 +0.4 208,902 + AO353_00915 0.73 +2.2 208,903 - AO353_00915 0.73 +1.6 208,903 - AO353_00915 0.73 +0.6 208,903 - AO353_00915 0.73 +2.9 208,997 + AO353_00915 0.80 -0.3 208,998 - AO353_00915 0.80 +1.4 209,126 + AO353_00915 0.88 +0.4 209,126 + AO353_00915 0.88 +1.2 209,126 + AO353_00915 0.88 +1.3 209,181 + +0.3 209,181 + +0.9 209,307 + +0.4 209,308 - +1.5 209,384 + +1.0 209,384 + +2.1 209,384 + +3.7 209,385 - +0.8 209,385 - -0.1 209,385 - +1.3 209,385 - +1.9 209,385 - -0.1 209,385 - +0.9 209,388 + +0.4 209,388 + -1.5 209,388 + +2.0 209,388 + -0.3 209,388 + +0.5 209,388 + +0.3 209,388 + +0.5 209,388 + +1.2 209,388 + +1.6 209,389 - +1.3 209,389 - -0.2 209,389 - +1.5 209,389 - -0.5 209,389 - +0.9 209,389 - -0.7 209,389 - +1.6 209,389 - +1.1 209,396 + +1.9 209,396 + +1.6 209,396 + +0.1 209,397 - +1.4 209,397 - -0.1 209,397 - +0.4 209,397 - +1.6 209,486 + AO353_00920 0.18 +0.9 209,545 + AO353_00920 0.24 +1.4 209,699 + AO353_00920 0.40 +2.1 209,699 + AO353_00920 0.40 -1.1 209,699 + AO353_00920 0.40 -1.1 209,699 + AO353_00920 0.40 +0.2 209,700 - AO353_00920 0.40 +0.9 209,777 + AO353_00920 0.47 +1.4 209,777 + AO353_00920 0.47 +0.3 209,778 - AO353_00920 0.48 +1.3 209,778 - AO353_00920 0.48 +1.4 209,986 - AO353_00920 0.69 -0.7 209,986 - AO353_00920 0.69 +1.9 210,005 + AO353_00920 0.71 +1.7 210,005 + AO353_00920 0.71 -0.5 210,041 + AO353_00920 0.74 +3.4 210,041 + AO353_00920 0.74 -0.7 210,041 + AO353_00920 0.74 -0.1 210,041 + AO353_00920 0.74 +1.4 210,041 + AO353_00920 0.74 +1.1 210,041 + AO353_00920 0.74 -0.6 210,042 - AO353_00920 0.74 +2.2 210,042 - AO353_00920 0.74 +1.6 210,063 - AO353_00920 0.76 +0.9 210,063 - AO353_00920 0.76 +1.1 210,294 - -0.9 210,294 - -0.1 210,343 + -1.7 210,343 + +0.4 210,364 + +0.0 210,364 + -0.2 210,364 + +1.1 210,364 + +0.0 210,364 + -0.5 210,364 + -0.6 210,364 + +0.1 210,364 + +0.9 210,364 + -1.7 210,364 + +0.1 210,364 + -1.7 210,364 + +2.2 210,365 - -0.2 210,365 - -0.1 210,365 - -0.1 210,365 - -0.1 210,365 - +0.9 210,365 - +0.6 210,365 - +0.2 210,365 - -0.4 210,365 - +2.2 210,365 - +0.7 210,365 - +0.0 210,365 - -1.5 210,365 - -0.7 210,365 - -0.1 210,365 - +1.2 210,390 + +0.9 210,391 - +0.4 210,471 + -2.5 210,471 + +0.4 210,471 + -1.0 210,471 + +0.9 210,471 + -0.1 210,471 + -1.1 210,471 + +1.4 210,471 + +0.4 210,472 - +0.3 210,472 - -0.2 210,472 - +1.9 210,472 - -0.7 210,472 - -0.4 210,472 - +1.2 210,472 - +0.9 210,472 - +0.3 210,472 - +0.0 210,472 - +1.0 210,472 - +0.2 210,472 - +1.1 210,472 - -2.6 210,472 - -2.1 210,472 - +1.6 210,494 - +0.2 210,516 + -0.1 210,516 + +0.3 210,516 + +1.7 210,517 - +0.9 210,517 - -2.0 210,517 - +2.4 210,517 - -0.1 210,517 - +0.3 210,575 - -1.1 210,575 - +1.0 210,575 - +0.3 210,575 - -1.1 210,575 - +1.4 210,643 + -0.4 210,643 + +1.3 210,644 - +0.6 210,644 - +0.5 210,644 - +0.5 210,644 - -1.6 210,684 + -0.2 210,684 + +1.4 210,684 + -0.7 210,684 + -0.1 210,685 - -0.4 210,817 + AO353_00925 0.19 +0.7 210,817 + AO353_00925 0.19 -0.4 210,817 + AO353_00925 0.19 +1.3 210,817 + AO353_00925 0.19 +1.4 210,818 - AO353_00925 0.19 -0.1 210,818 - AO353_00925 0.19 +0.4 210,844 - AO353_00925 0.21 -0.5 210,933 + AO353_00925 0.28 -0.8 210,933 + AO353_00925 0.28 +0.1 210,934 - AO353_00925 0.28 +0.9 210,934 - AO353_00925 0.28 +1.7 210,934 - AO353_00925 0.28 -0.5 211,110 + AO353_00925 0.41 +0.2 211,111 - AO353_00925 0.41 -0.5 211,140 + AO353_00925 0.43 +1.3 211,140 + AO353_00925 0.43 -0.3 211,140 + AO353_00925 0.43 +0.5 211,141 - AO353_00925 0.43 +1.1 211,141 - AO353_00925 0.43 -1.5 211,141 - AO353_00925 0.43 -0.5 211,141 - AO353_00925 0.43 -1.0 211,141 - AO353_00925 0.43 -0.6 211,141 - AO353_00925 0.43 -1.5 211,141 - AO353_00925 0.43 +0.4 211,141 - AO353_00925 0.43 -1.5 211,141 - AO353_00925 0.43 +0.8 211,141 - AO353_00925 0.43 -1.5 211,141 - AO353_00925 0.43 -0.4 211,161 + AO353_00925 0.45 -0.5 211,162 - AO353_00925 0.45 +1.9 211,162 - AO353_00925 0.45 +1.2
Or see this region's nucleotide sequence