Experiment: Gentamicin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00905 and AO353_00910 are separated by 270 nucleotides AO353_00910 and AO353_00915 are separated by 5 nucleotides AO353_00915 and AO353_00920 overlap by 1 nucleotides
AO353_00905: AO353_00905 - GntR family transcriptional regulator, at 206,239 to 206,961
_00905
AO353_00910: AO353_00910 - ATP-dependent zinc protease, at 207,232 to 207,771
_00910
AO353_00915: AO353_00915 - hypothetical protein, at 207,777 to 209,309
_00915
AO353_00920: AO353_00920 - alpha-L-glutamate ligase, at 209,309 to 210,295
_00920
Position (kb) 207
208
209
210 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 206.814 kb on - strand, within AO353_00905 at 207.054 kb on + strand at 207.067 kb on + strand at 207.067 kb on + strand at 207.068 kb on - strand at 207.068 kb on - strand at 207.075 kb on - strand at 207.078 kb on + strand at 207.079 kb on - strand at 207.079 kb on - strand at 207.106 kb on - strand at 207.106 kb on - strand at 207.119 kb on + strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.120 kb on - strand at 207.153 kb on - strand at 207.164 kb on + strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.165 kb on - strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.231 kb on + strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.232 kb on - strand at 207.266 kb on + strand at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.313 kb on + strand, within AO353_00910 at 207.314 kb on - strand, within AO353_00910 at 207.328 kb on + strand, within AO353_00910 at 207.328 kb on + strand, within AO353_00910 at 207.411 kb on + strand, within AO353_00910 at 207.455 kb on - strand, within AO353_00910 at 207.562 kb on + strand, within AO353_00910 at 207.562 kb on + strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.563 kb on - strand, within AO353_00910 at 207.591 kb on + strand, within AO353_00910 at 207.592 kb on - strand, within AO353_00910 at 207.620 kb on + strand, within AO353_00910 at 207.620 kb on + strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.621 kb on - strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.717 kb on + strand, within AO353_00910 at 207.718 kb on - strand at 207.718 kb on - strand at 207.718 kb on - strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.721 kb on + strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.722 kb on - strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.769 kb on + strand at 207.770 kb on - strand at 207.770 kb on - strand at 207.817 kb on + strand at 207.849 kb on + strand at 207.990 kb on + strand, within AO353_00915 at 207.991 kb on - strand, within AO353_00915 at 207.991 kb on - strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.013 kb on + strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.014 kb on - strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.026 kb on + strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.027 kb on - strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.107 kb on + strand, within AO353_00915 at 208.108 kb on - strand, within AO353_00915 at 208.108 kb on - strand, within AO353_00915 at 208.134 kb on + strand, within AO353_00915 at 208.134 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.390 kb on + strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.391 kb on - strand, within AO353_00915 at 208.461 kb on - strand, within AO353_00915 at 208.461 kb on - strand, within AO353_00915 at 208.485 kb on + strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.486 kb on - strand, within AO353_00915 at 208.655 kb on + strand, within AO353_00915 at 208.655 kb on + strand, within AO353_00915 at 208.677 kb on + strand, within AO353_00915 at 208.687 kb on - strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.856 kb on + strand, within AO353_00915 at 208.857 kb on - strand, within AO353_00915 at 208.866 kb on - strand, within AO353_00915 at 208.902 kb on + strand, within AO353_00915 at 208.902 kb on + strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.903 kb on - strand, within AO353_00915 at 208.997 kb on + strand, within AO353_00915 at 208.998 kb on - strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.126 kb on + strand, within AO353_00915 at 209.181 kb on + strand at 209.181 kb on + strand at 209.307 kb on + strand at 209.308 kb on - strand at 209.384 kb on + strand at 209.384 kb on + strand at 209.384 kb on + strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.385 kb on - strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.388 kb on + strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.389 kb on - strand at 209.396 kb on + strand at 209.396 kb on + strand at 209.396 kb on + strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.397 kb on - strand at 209.486 kb on + strand, within AO353_00920 at 209.545 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.699 kb on + strand, within AO353_00920 at 209.700 kb on - strand, within AO353_00920 at 209.777 kb on + strand, within AO353_00920 at 209.777 kb on + strand, within AO353_00920 at 209.778 kb on - strand, within AO353_00920 at 209.778 kb on - strand, within AO353_00920 at 209.986 kb on - strand, within AO353_00920 at 209.986 kb on - strand, within AO353_00920 at 210.005 kb on + strand, within AO353_00920 at 210.005 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.041 kb on + strand, within AO353_00920 at 210.042 kb on - strand, within AO353_00920 at 210.042 kb on - strand, within AO353_00920 at 210.063 kb on - strand, within AO353_00920 at 210.063 kb on - strand, within AO353_00920 at 210.294 kb on - strand at 210.294 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml remove 206,814 - AO353_00905 0.80 -2.0 207,054 + -2.3 207,067 + -2.0 207,067 + -2.0 207,068 - +1.5 207,068 - +0.6 207,075 - +1.9 207,078 + -1.8 207,079 - +1.9 207,079 - +1.3 207,106 - +0.9 207,106 - +0.5 207,119 + -0.8 207,120 - +2.0 207,120 - +2.2 207,120 - +1.1 207,120 - +0.6 207,120 - +0.6 207,120 - +2.4 207,153 - +0.9 207,164 + -0.1 207,165 - -0.1 207,165 - +0.5 207,165 - +2.3 207,165 - +1.0 207,165 - +2.8 207,165 - +3.6 207,165 - +1.0 207,231 + +0.7 207,231 + -1.4 207,231 + -1.0 207,231 + -0.3 207,232 - +0.9 207,232 - +1.9 207,232 - +1.5 207,232 - +1.7 207,232 - +1.7 207,232 - +2.3 207,266 + +0.5 207,313 + AO353_00910 0.15 +0.7 207,313 + AO353_00910 0.15 +0.7 207,313 + AO353_00910 0.15 +3.4 207,313 + AO353_00910 0.15 +2.4 207,313 + AO353_00910 0.15 -0.6 207,314 - AO353_00910 0.15 +0.3 207,328 + AO353_00910 0.18 +1.6 207,328 + AO353_00910 0.18 +1.2 207,411 + AO353_00910 0.33 -0.3 207,455 - AO353_00910 0.41 +0.8 207,562 + AO353_00910 0.61 +0.6 207,562 + AO353_00910 0.61 +0.0 207,563 - AO353_00910 0.61 +1.2 207,563 - AO353_00910 0.61 +1.2 207,563 - AO353_00910 0.61 +2.5 207,563 - AO353_00910 0.61 +2.7 207,563 - AO353_00910 0.61 +1.5 207,563 - AO353_00910 0.61 +1.0 207,591 + AO353_00910 0.66 -0.0 207,592 - AO353_00910 0.67 +0.2 207,620 + AO353_00910 0.72 +0.9 207,620 + AO353_00910 0.72 -1.1 207,621 - AO353_00910 0.72 +1.1 207,621 - AO353_00910 0.72 +0.9 207,621 - AO353_00910 0.72 +1.7 207,621 - AO353_00910 0.72 +0.9 207,621 - AO353_00910 0.72 +0.6 207,621 - AO353_00910 0.72 +2.4 207,621 - AO353_00910 0.72 +1.4 207,621 - AO353_00910 0.72 +1.2 207,621 - AO353_00910 0.72 +1.2 207,621 - AO353_00910 0.72 +1.4 207,621 - AO353_00910 0.72 -0.1 207,621 - AO353_00910 0.72 +0.6 207,717 + AO353_00910 0.90 -1.5 207,717 + AO353_00910 0.90 -0.7 207,717 + AO353_00910 0.90 +0.4 207,717 + AO353_00910 0.90 +0.3 207,717 + AO353_00910 0.90 -1.1 207,717 + AO353_00910 0.90 -0.4 207,717 + AO353_00910 0.90 -0.3 207,717 + AO353_00910 0.90 +0.7 207,718 - +2.3 207,718 - -0.5 207,718 - +1.3 207,721 + +0.6 207,721 + +1.9 207,721 + +0.8 207,721 + -1.0 207,721 + +0.4 207,721 + +1.4 207,722 - +0.2 207,722 - +1.9 207,722 - +1.0 207,722 - +0.6 207,769 + +1.0 207,769 + +1.2 207,769 + +0.4 207,769 + +0.1 207,769 + +0.4 207,769 + +1.4 207,770 - +0.6 207,770 - +0.3 207,817 + +1.4 207,849 + +2.2 207,990 + AO353_00915 0.14 +1.1 207,991 - AO353_00915 0.14 +1.6 207,991 - AO353_00915 0.14 +3.4 208,013 + AO353_00915 0.15 +1.6 208,013 + AO353_00915 0.15 +2.2 208,013 + AO353_00915 0.15 +1.4 208,014 - AO353_00915 0.15 +1.4 208,014 - AO353_00915 0.15 -1.3 208,014 - AO353_00915 0.15 +1.0 208,026 + AO353_00915 0.16 +1.9 208,026 + AO353_00915 0.16 +0.5 208,026 + AO353_00915 0.16 +0.0 208,026 + AO353_00915 0.16 -0.7 208,026 + AO353_00915 0.16 +2.0 208,026 + AO353_00915 0.16 +1.0 208,027 - AO353_00915 0.16 -0.1 208,027 - AO353_00915 0.16 +0.7 208,027 - AO353_00915 0.16 +0.2 208,027 - AO353_00915 0.16 +2.0 208,027 - AO353_00915 0.16 +0.3 208,027 - AO353_00915 0.16 +1.1 208,027 - AO353_00915 0.16 +1.3 208,027 - AO353_00915 0.16 +0.4 208,027 - AO353_00915 0.16 +2.8 208,027 - AO353_00915 0.16 +1.5 208,027 - AO353_00915 0.16 +0.9 208,027 - AO353_00915 0.16 +1.8 208,027 - AO353_00915 0.16 -0.1 208,107 + AO353_00915 0.22 +0.5 208,107 + AO353_00915 0.22 +1.0 208,107 + AO353_00915 0.22 +1.2 208,107 + AO353_00915 0.22 +1.6 208,108 - AO353_00915 0.22 +1.1 208,108 - AO353_00915 0.22 -0.6 208,134 + AO353_00915 0.23 +0.9 208,134 + AO353_00915 0.23 +0.7 208,390 + AO353_00915 0.40 +1.9 208,390 + AO353_00915 0.40 -0.4 208,390 + AO353_00915 0.40 +0.6 208,391 - AO353_00915 0.40 +2.4 208,391 - AO353_00915 0.40 +1.7 208,391 - AO353_00915 0.40 +0.9 208,391 - AO353_00915 0.40 +0.6 208,461 - AO353_00915 0.45 +0.3 208,461 - AO353_00915 0.45 +0.1 208,485 + AO353_00915 0.46 +1.3 208,486 - AO353_00915 0.46 +1.9 208,486 - AO353_00915 0.46 -0.4 208,486 - AO353_00915 0.46 +3.9 208,486 - AO353_00915 0.46 +2.0 208,486 - AO353_00915 0.46 +1.5 208,655 + AO353_00915 0.57 +1.4 208,655 + AO353_00915 0.57 +3.9 208,677 + AO353_00915 0.59 +0.5 208,687 - AO353_00915 0.59 +0.8 208,856 + AO353_00915 0.70 +0.7 208,856 + AO353_00915 0.70 +0.4 208,856 + AO353_00915 0.70 +0.3 208,856 + AO353_00915 0.70 +1.1 208,857 - AO353_00915 0.70 +0.9 208,866 - AO353_00915 0.71 +1.3 208,902 + AO353_00915 0.73 +0.4 208,902 + AO353_00915 0.73 +2.2 208,903 - AO353_00915 0.73 +1.6 208,903 - AO353_00915 0.73 +0.6 208,903 - AO353_00915 0.73 +2.9 208,997 + AO353_00915 0.80 -0.3 208,998 - AO353_00915 0.80 +1.4 209,126 + AO353_00915 0.88 +0.4 209,126 + AO353_00915 0.88 +1.2 209,126 + AO353_00915 0.88 +1.3 209,181 + +0.3 209,181 + +0.9 209,307 + +0.4 209,308 - +1.5 209,384 + +1.0 209,384 + +2.1 209,384 + +3.7 209,385 - +0.8 209,385 - -0.1 209,385 - +1.3 209,385 - +1.9 209,385 - -0.1 209,385 - +0.9 209,388 + +0.4 209,388 + -1.5 209,388 + +2.0 209,388 + -0.3 209,388 + +0.5 209,388 + +0.3 209,388 + +0.5 209,388 + +1.2 209,388 + +1.6 209,389 - +1.3 209,389 - -0.2 209,389 - +1.5 209,389 - -0.5 209,389 - +0.9 209,389 - -0.7 209,389 - +1.6 209,389 - +1.1 209,396 + +1.9 209,396 + +1.6 209,396 + +0.1 209,397 - +1.4 209,397 - -0.1 209,397 - +0.4 209,397 - +1.6 209,486 + AO353_00920 0.18 +0.9 209,545 + AO353_00920 0.24 +1.4 209,699 + AO353_00920 0.40 +2.1 209,699 + AO353_00920 0.40 -1.1 209,699 + AO353_00920 0.40 -1.1 209,699 + AO353_00920 0.40 +0.2 209,700 - AO353_00920 0.40 +0.9 209,777 + AO353_00920 0.47 +1.4 209,777 + AO353_00920 0.47 +0.3 209,778 - AO353_00920 0.48 +1.3 209,778 - AO353_00920 0.48 +1.4 209,986 - AO353_00920 0.69 -0.7 209,986 - AO353_00920 0.69 +1.9 210,005 + AO353_00920 0.71 +1.7 210,005 + AO353_00920 0.71 -0.5 210,041 + AO353_00920 0.74 +3.4 210,041 + AO353_00920 0.74 -0.7 210,041 + AO353_00920 0.74 -0.1 210,041 + AO353_00920 0.74 +1.4 210,041 + AO353_00920 0.74 +1.1 210,041 + AO353_00920 0.74 -0.6 210,042 - AO353_00920 0.74 +2.2 210,042 - AO353_00920 0.74 +1.6 210,063 - AO353_00920 0.76 +0.9 210,063 - AO353_00920 0.76 +1.1 210,294 - -0.9 210,294 - -0.1
Or see this region's nucleotide sequence