Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00905

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00895 and AO353_00900 are separated by 67 nucleotidesAO353_00900 and AO353_00905 overlap by 4 nucleotidesAO353_00905 and AO353_00910 are separated by 270 nucleotidesAO353_00910 and AO353_00915 are separated by 5 nucleotides AO353_00895: AO353_00895 - 2-methylcitrate synthase, at 204,154 to 205,281 _00895 AO353_00900: AO353_00900 - 2-methylisocitrate lyase, at 205,349 to 206,242 _00900 AO353_00905: AO353_00905 - GntR family transcriptional regulator, at 206,239 to 206,961 _00905 AO353_00910: AO353_00910 - ATP-dependent zinc protease, at 207,232 to 207,771 _00910 AO353_00915: AO353_00915 - hypothetical protein, at 207,777 to 209,309 _00915 Position (kb) 206 207Strain fitness (log2 ratio) -2 -1 0 1 2 3at 205.265 kb on - strandat 205.265 kb on - strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.324 kb on + strandat 205.325 kb on - strandat 205.341 kb on - strandat 205.417 kb on - strandat 205.485 kb on + strand, within AO353_00900at 205.485 kb on + strand, within AO353_00900at 205.486 kb on - strand, within AO353_00900at 205.486 kb on - strand, within AO353_00900at 205.578 kb on + strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.579 kb on - strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strand, within AO353_00900at 205.650 kb on + strandat 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strandat 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.651 kb on - strand, within AO353_00900at 205.670 kb on - strand, within AO353_00900at 205.670 kb on - strand, within AO353_00900at 205.852 kb on + strand, within AO353_00900at 206.024 kb on + strand, within AO353_00900at 206.024 kb on + strand, within AO353_00900at 206.109 kb on + strand, within AO353_00900at 206.109 kb on + strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strand, within AO353_00900at 206.110 kb on - strandat 206.110 kb on - strandat 206.113 kb on + strand, within AO353_00900at 206.113 kb on + strand, within AO353_00900at 206.113 kb on + strand, within AO353_00900at 206.286 kb on - strandat 206.441 kb on + strand, within AO353_00905at 206.442 kb on - strand, within AO353_00905at 206.442 kb on - strand, within AO353_00905at 206.459 kb on + strand, within AO353_00905at 206.459 kb on + strand, within AO353_00905at 206.460 kb on - strand, within AO353_00905at 206.550 kb on - strand, within AO353_00905at 206.688 kb on - strand, within AO353_00905at 206.734 kb on + strand, within AO353_00905at 206.735 kb on - strand, within AO353_00905at 206.814 kb on - strand, within AO353_00905at 207.054 kb on + strandat 207.067 kb on + strandat 207.067 kb on + strandat 207.068 kb on - strandat 207.068 kb on - strandat 207.075 kb on - strandat 207.078 kb on + strandat 207.079 kb on - strandat 207.079 kb on - strandat 207.106 kb on - strandat 207.106 kb on - strandat 207.119 kb on + strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.120 kb on - strandat 207.153 kb on - strandat 207.164 kb on + strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.165 kb on - strandat 207.231 kb on + strandat 207.231 kb on + strandat 207.231 kb on + strandat 207.231 kb on + strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.232 kb on - strandat 207.266 kb on + strandat 207.313 kb on + strand, within AO353_00910at 207.313 kb on + strand, within AO353_00910at 207.313 kb on + strand, within AO353_00910at 207.313 kb on + strand, within AO353_00910at 207.313 kb on + strand, within AO353_00910at 207.314 kb on - strand, within AO353_00910at 207.328 kb on + strand, within AO353_00910at 207.328 kb on + strand, within AO353_00910at 207.411 kb on + strand, within AO353_00910at 207.455 kb on - strand, within AO353_00910at 207.562 kb on + strand, within AO353_00910at 207.562 kb on + strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.563 kb on - strand, within AO353_00910at 207.591 kb on + strand, within AO353_00910at 207.592 kb on - strand, within AO353_00910at 207.620 kb on + strand, within AO353_00910at 207.620 kb on + strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.621 kb on - strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.717 kb on + strand, within AO353_00910at 207.718 kb on - strandat 207.718 kb on - strandat 207.718 kb on - strandat 207.721 kb on + strandat 207.721 kb on + strandat 207.721 kb on + strandat 207.721 kb on + strandat 207.721 kb on + strandat 207.721 kb on + strandat 207.722 kb on - strandat 207.722 kb on - strandat 207.722 kb on - strandat 207.722 kb on - strandat 207.769 kb on + strandat 207.769 kb on + strandat 207.769 kb on + strandat 207.769 kb on + strandat 207.769 kb on + strandat 207.769 kb on + strandat 207.770 kb on - strandat 207.770 kb on - strandat 207.817 kb on + strandat 207.849 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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205,265 - +1.3
205,265 - +0.3
205,324 + -2.0
205,324 + +0.9
205,324 + +0.5
205,324 + +0.4
205,325 - +0.4
205,341 - -0.4
205,417 - -1.1
205,485 + AO353_00900 0.15 -1.6
205,485 + AO353_00900 0.15 -0.5
205,486 - AO353_00900 0.15 +1.4
205,486 - AO353_00900 0.15 -1.1
205,578 + AO353_00900 0.26 -2.7
205,579 - AO353_00900 0.26 +0.3
205,579 - AO353_00900 0.26 +0.1
205,579 - AO353_00900 0.26 -0.4
205,650 + AO353_00900 0.34 -1.1
205,650 + AO353_00900 0.34 +1.9
205,650 + AO353_00900 0.34 +0.3
205,650 + AO353_00900 0.34 +0.9
205,650 + AO353_00900 0.34 -0.0
205,650 + AO353_00900 0.34 -0.7
205,650 + AO353_00900 0.34 +1.1
205,650 + +2.4
205,651 - AO353_00900 0.34 -1.1
205,651 - AO353_00900 0.34 -2.3
205,651 - AO353_00900 0.34 -1.7
205,651 - AO353_00900 0.34 +1.4
205,651 - AO353_00900 0.34 -0.3
205,651 - AO353_00900 0.34 -1.7
205,651 - AO353_00900 0.34 -1.0
205,651 - AO353_00900 0.34 -0.6
205,651 - AO353_00900 0.34 -1.5
205,651 - AO353_00900 0.34 -1.5
205,651 - AO353_00900 0.34 +0.3
205,651 - +0.3
205,651 - AO353_00900 0.34 -1.0
205,651 - AO353_00900 0.34 -0.9
205,651 - AO353_00900 0.34 +0.1
205,670 - AO353_00900 0.36 -0.7
205,670 - AO353_00900 0.36 -0.9
205,852 + AO353_00900 0.56 +1.9
206,024 + AO353_00900 0.76 +0.3
206,024 + AO353_00900 0.76 -2.1
206,109 + AO353_00900 0.85 -1.0
206,109 + AO353_00900 0.85 -1.0
206,110 - AO353_00900 0.85 -2.0
206,110 - AO353_00900 0.85 -0.5
206,110 - AO353_00900 0.85 -0.5
206,110 - AO353_00900 0.85 -1.1
206,110 - AO353_00900 0.85 -2.1
206,110 - AO353_00900 0.85 -1.0
206,110 - AO353_00900 0.85 -0.1
206,110 - AO353_00900 0.85 -2.1
206,110 - AO353_00900 0.85 +0.9
206,110 - AO353_00900 0.85 +0.4
206,110 - -0.1
206,110 - +0.9
206,113 + AO353_00900 0.85 +0.1
206,113 + AO353_00900 0.85 -1.0
206,113 + AO353_00900 0.85 +0.8
206,286 - -0.3
206,441 + AO353_00905 0.28 +3.2
206,442 - AO353_00905 0.28 +0.8
206,442 - AO353_00905 0.28 +1.9
206,459 + AO353_00905 0.30 +0.7
206,459 + AO353_00905 0.30 +0.4
206,460 - AO353_00905 0.31 +0.3
206,550 - AO353_00905 0.43 -0.7
206,688 - AO353_00905 0.62 +0.2
206,734 + AO353_00905 0.68 -0.2
206,735 - AO353_00905 0.69 +1.3
206,814 - AO353_00905 0.80 -2.0
207,054 + -2.3
207,067 + -2.0
207,067 + -2.0
207,068 - +1.5
207,068 - +0.6
207,075 - +1.9
207,078 + -1.8
207,079 - +1.9
207,079 - +1.3
207,106 - +0.9
207,106 - +0.5
207,119 + -0.8
207,120 - +2.0
207,120 - +2.2
207,120 - +1.1
207,120 - +0.6
207,120 - +0.6
207,120 - +2.4
207,153 - +0.9
207,164 + -0.1
207,165 - -0.1
207,165 - +0.5
207,165 - +2.3
207,165 - +1.0
207,165 - +2.8
207,165 - +3.6
207,165 - +1.0
207,231 + +0.7
207,231 + -1.4
207,231 + -1.0
207,231 + -0.3
207,232 - +0.9
207,232 - +1.9
207,232 - +1.5
207,232 - +1.7
207,232 - +1.7
207,232 - +2.3
207,266 + +0.5
207,313 + AO353_00910 0.15 +0.7
207,313 + AO353_00910 0.15 +0.7
207,313 + AO353_00910 0.15 +3.4
207,313 + AO353_00910 0.15 +2.4
207,313 + AO353_00910 0.15 -0.6
207,314 - AO353_00910 0.15 +0.3
207,328 + AO353_00910 0.18 +1.6
207,328 + AO353_00910 0.18 +1.2
207,411 + AO353_00910 0.33 -0.3
207,455 - AO353_00910 0.41 +0.8
207,562 + AO353_00910 0.61 +0.6
207,562 + AO353_00910 0.61 +0.0
207,563 - AO353_00910 0.61 +1.2
207,563 - AO353_00910 0.61 +1.2
207,563 - AO353_00910 0.61 +2.5
207,563 - AO353_00910 0.61 +2.7
207,563 - AO353_00910 0.61 +1.5
207,563 - AO353_00910 0.61 +1.0
207,591 + AO353_00910 0.66 -0.0
207,592 - AO353_00910 0.67 +0.2
207,620 + AO353_00910 0.72 +0.9
207,620 + AO353_00910 0.72 -1.1
207,621 - AO353_00910 0.72 +1.1
207,621 - AO353_00910 0.72 +0.9
207,621 - AO353_00910 0.72 +1.7
207,621 - AO353_00910 0.72 +0.9
207,621 - AO353_00910 0.72 +0.6
207,621 - AO353_00910 0.72 +2.4
207,621 - AO353_00910 0.72 +1.4
207,621 - AO353_00910 0.72 +1.2
207,621 - AO353_00910 0.72 +1.2
207,621 - AO353_00910 0.72 +1.4
207,621 - AO353_00910 0.72 -0.1
207,621 - AO353_00910 0.72 +0.6
207,717 + AO353_00910 0.90 -1.5
207,717 + AO353_00910 0.90 -0.7
207,717 + AO353_00910 0.90 +0.4
207,717 + AO353_00910 0.90 +0.3
207,717 + AO353_00910 0.90 -1.1
207,717 + AO353_00910 0.90 -0.4
207,717 + AO353_00910 0.90 -0.3
207,717 + AO353_00910 0.90 +0.7
207,718 - +2.3
207,718 - -0.5
207,718 - +1.3
207,721 + +0.6
207,721 + +1.9
207,721 + +0.8
207,721 + -1.0
207,721 + +0.4
207,721 + +1.4
207,722 - +0.2
207,722 - +1.9
207,722 - +1.0
207,722 - +0.6
207,769 + +1.0
207,769 + +1.2
207,769 + +0.4
207,769 + +0.1
207,769 + +0.4
207,769 + +1.4
207,770 - +0.6
207,770 - +0.3
207,817 + +1.4
207,849 + +2.2

Or see this region's nucleotide sequence