Experiment: Gentamicin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00330 and AO353_00335 are separated by 188 nucleotides AO353_00335 and AO353_00340 are separated by 123 nucleotides AO353_00340 and AO353_00345 are separated by 246 nucleotides
AO353_00330: AO353_00330 - hypothetical protein, at 60,464 to 61,153
_00330
AO353_00335: AO353_00335 - phosphatase, at 61,342 to 61,962
_00335
AO353_00340: AO353_00340 - chromosome partitioning protein ParA, at 62,086 to 62,349
_00340
AO353_00345: AO353_00345 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 62,596 to 63,426
_00345
Position (kb) 62
63 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.120 kb on + strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.121 kb on - strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.124 kb on + strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.125 kb on - strand at 61.133 kb on + strand at 61.134 kb on - strand at 61.214 kb on - strand at 61.214 kb on - strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.216 kb on + strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.217 kb on - strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.218 kb on + strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.219 kb on - strand at 61.228 kb on - strand at 61.228 kb on - strand at 61.228 kb on - strand at 61.228 kb on - strand at 61.232 kb on - strand at 61.232 kb on - strand at 61.232 kb on - strand at 61.232 kb on - strand at 61.237 kb on + strand at 61.237 kb on + strand at 61.325 kb on - strand at 61.325 kb on - strand at 61.325 kb on - strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.337 kb on + strand at 61.338 kb on - strand at 61.338 kb on - strand at 62.009 kb on - strand at 62.013 kb on + strand at 62.052 kb on + strand at 62.052 kb on + strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.421 kb on + strand at 62.421 kb on + strand at 62.421 kb on + strand at 62.422 kb on - strand at 62.422 kb on - strand at 62.422 kb on - strand at 62.422 kb on - strand at 62.427 kb on + strand at 62.427 kb on + strand at 62.427 kb on + strand at 62.428 kb on - strand at 62.443 kb on - strand at 62.443 kb on - strand at 62.494 kb on - strand at 62.494 kb on - strand at 62.514 kb on + strand at 62.514 kb on + strand at 62.515 kb on - strand at 62.569 kb on + strand at 62.569 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.592 kb on - strand at 62.592 kb on - strand at 62.592 kb on - strand at 62.597 kb on + strand at 62.681 kb on + strand, within AO353_00345 at 62.690 kb on + strand, within AO353_00345 at 62.690 kb on + strand, within AO353_00345 at 62.690 kb on + strand, within AO353_00345 at 62.690 kb on + strand, within AO353_00345 at 62.691 kb on - strand, within AO353_00345 at 62.691 kb on - strand, within AO353_00345 at 62.691 kb on - strand, within AO353_00345 at 62.746 kb on + strand, within AO353_00345 at 62.746 kb on + strand, within AO353_00345 at 62.793 kb on - strand, within AO353_00345 at 62.793 kb on - strand, within AO353_00345 at 62.963 kb on + strand, within AO353_00345 at 62.963 kb on + strand, within AO353_00345 at 62.963 kb on + strand, within AO353_00345 at 62.963 kb on + strand, within AO353_00345 at 63.013 kb on + strand, within AO353_00345 at 63.013 kb on + strand, within AO353_00345 at 63.013 kb on + strand, within AO353_00345 at 63.014 kb on - strand, within AO353_00345 at 63.014 kb on - strand, within AO353_00345 at 63.051 kb on + strand, within AO353_00345 at 63.155 kb on + strand, within AO353_00345 at 63.291 kb on - strand, within AO353_00345 at 63.291 kb on - strand, within AO353_00345 at 63.291 kb on - strand, within AO353_00345 at 63.291 kb on - strand, within AO353_00345
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml remove 61,120 + -1.3 61,120 + +0.6 61,120 + +0.3 61,120 + +0.8 61,120 + +0.5 61,120 + +0.4 61,120 + +0.8 61,120 + -1.0 61,120 + -2.0 61,120 + +0.1 61,120 + -0.8 61,120 + +0.6 61,120 + +1.6 61,120 + +0.8 61,120 + -2.0 61,120 + +1.1 61,120 + +0.8 61,120 + +0.2 61,120 + +1.1 61,121 - +0.2 61,121 - +1.4 61,121 - +0.1 61,121 - +1.8 61,121 - -0.2 61,121 - +1.3 61,121 - -0.5 61,121 - -1.2 61,121 - +0.1 61,121 - +1.2 61,121 - -0.5 61,121 - +1.2 61,121 - +1.8 61,121 - +4.0 61,124 + +0.4 61,124 + +0.0 61,124 + +0.4 61,124 + -0.8 61,124 + +0.6 61,124 + +2.4 61,124 + +0.5 61,124 + +1.1 61,124 + -0.0 61,124 + +0.1 61,125 - -2.3 61,125 - +0.4 61,125 - +0.8 61,125 - -0.5 61,125 - +3.0 61,125 - +0.8 61,125 - +1.2 61,125 - +1.6 61,125 - +0.8 61,133 + -0.4 61,134 - -2.0 61,214 - -0.5 61,214 - +3.1 61,216 + +0.8 61,216 + -1.5 61,216 + +1.8 61,216 + +1.1 61,216 + +0.2 61,217 - +0.7 61,217 - -0.3 61,217 - -1.3 61,217 - +0.4 61,217 - -1.3 61,217 - -1.2 61,218 + +2.0 61,218 + +0.3 61,218 + -0.4 61,218 + +0.8 61,218 + -0.4 61,218 + +0.6 61,219 - -0.4 61,219 - -1.0 61,219 - +1.8 61,219 - -0.4 61,219 - +1.6 61,219 - +0.2 61,228 - -0.8 61,228 - -1.2 61,228 - -0.4 61,228 - -1.5 61,232 - +0.9 61,232 - +1.4 61,232 - -0.6 61,232 - -0.0 61,237 + -1.8 61,237 + +2.2 61,325 - -0.6 61,325 - -0.8 61,325 - +1.2 61,337 + +0.8 61,337 + +1.4 61,337 + +1.3 61,337 + +0.5 61,337 + +0.8 61,338 - -1.2 61,338 - -0.9 62,009 - -0.4 62,013 + -0.0 62,052 + -0.8 62,052 + +0.2 62,053 - +0.0 62,053 - -1.2 62,053 - +0.2 62,053 - -0.3 62,421 + -0.3 62,421 + -0.6 62,421 + -0.4 62,422 - +0.8 62,422 - -0.5 62,422 - +0.5 62,422 - -2.0 62,427 + +1.0 62,427 + -2.0 62,427 + -0.2 62,428 - +0.0 62,443 - -0.6 62,443 - -1.0 62,494 - +0.1 62,494 - -1.8 62,514 + -0.6 62,514 + +0.1 62,515 - -0.2 62,569 + -0.2 62,569 + -0.2 62,591 + -0.2 62,591 + +1.8 62,591 + -1.3 62,591 + -0.6 62,591 + -1.5 62,591 + +0.2 62,591 + +0.2 62,591 + -1.8 62,591 + -0.6 62,591 + -0.2 62,591 + +0.4 62,591 + -0.3 62,591 + -1.4 62,592 - +0.6 62,592 - +0.2 62,592 - -0.5 62,597 + +2.2 62,681 + AO353_00345 0.10 -1.5 62,690 + AO353_00345 0.11 -1.5 62,690 + AO353_00345 0.11 -0.2 62,690 + AO353_00345 0.11 -0.6 62,690 + AO353_00345 0.11 -1.2 62,691 - AO353_00345 0.11 -0.2 62,691 - AO353_00345 0.11 -1.2 62,691 - AO353_00345 0.11 -1.8 62,746 + AO353_00345 0.18 +0.8 62,746 + AO353_00345 0.18 -1.2 62,793 - AO353_00345 0.24 -0.4 62,793 - AO353_00345 0.24 +1.4 62,963 + AO353_00345 0.44 +0.2 62,963 + AO353_00345 0.44 +0.8 62,963 + AO353_00345 0.44 -0.3 62,963 + AO353_00345 0.44 -1.6 63,013 + AO353_00345 0.50 -0.3 63,013 + AO353_00345 0.50 -0.2 63,013 + AO353_00345 0.50 -1.5 63,014 - AO353_00345 0.50 -2.1 63,014 - AO353_00345 0.50 -0.3 63,051 + AO353_00345 0.55 +0.4 63,155 + AO353_00345 0.67 -0.2 63,291 - AO353_00345 0.84 +0.5 63,291 - AO353_00345 0.84 -1.5 63,291 - AO353_00345 0.84 +0.8 63,291 - AO353_00345 0.84 -0.8
Or see this region's nucleotide sequence