Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00210

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00200 and AO353_00205 overlap by 4 nucleotidesAO353_00205 and AO353_00210 are separated by 97 nucleotidesAO353_00210 and AO353_00215 overlap by 4 nucleotides AO353_00195: AO353_00195 - virion morphogenesis protein, at 37,166 to 37,849 _00195 AO353_00200: AO353_00200 - phage tail protein, at 37,836 to 38,288 _00200 AO353_00205: AO353_00205 - head protein, at 38,285 to 38,746 _00205 AO353_00210: AO353_00210 - terminase, at 38,844 to 39,566 _00210 AO353_00215: AO353_00215 - capsid protein, at 39,563 to 40,582 _00215 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2 3at 37.952 kb on - strand, within AO353_00200at 38.124 kb on + strand, within AO353_00200at 38.288 kb on + strandat 38.288 kb on + strandat 38.289 kb on - strandat 38.289 kb on - strandat 38.440 kb on + strand, within AO353_00205at 38.440 kb on + strand, within AO353_00205at 38.440 kb on + strand, within AO353_00205at 38.440 kb on + strand, within AO353_00205at 38.440 kb on + strand, within AO353_00205at 38.441 kb on - strand, within AO353_00205at 38.457 kb on + strand, within AO353_00205at 38.458 kb on - strand, within AO353_00205at 38.458 kb on - strand, within AO353_00205at 38.472 kb on + strand, within AO353_00205at 38.472 kb on + strand, within AO353_00205at 38.473 kb on - strand, within AO353_00205at 38.481 kb on - strand, within AO353_00205at 38.509 kb on + strand, within AO353_00205at 38.509 kb on + strand, within AO353_00205at 38.631 kb on + strand, within AO353_00205at 38.702 kb on + strandat 38.703 kb on - strandat 38.703 kb on - strandat 38.763 kb on - strandat 38.797 kb on + strandat 38.797 kb on + strandat 38.798 kb on - strandat 38.798 kb on - strandat 39.013 kb on + strand, within AO353_00210at 39.013 kb on + strand, within AO353_00210at 39.013 kb on + strand, within AO353_00210at 39.013 kb on + strand, within AO353_00210at 39.014 kb on - strand, within AO353_00210at 39.014 kb on - strand, within AO353_00210at 39.014 kb on - strand, within AO353_00210at 39.014 kb on - strand, within AO353_00210at 39.079 kb on + strand, within AO353_00210at 39.080 kb on + strand, within AO353_00210at 39.080 kb on - strand, within AO353_00210at 39.080 kb on - strand, within AO353_00210at 39.080 kb on - strand, within AO353_00210at 39.106 kb on + strand, within AO353_00210at 39.107 kb on - strand, within AO353_00210at 39.115 kb on + strand, within AO353_00210at 39.307 kb on + strand, within AO353_00210at 39.307 kb on + strand, within AO353_00210at 39.308 kb on - strand, within AO353_00210at 39.308 kb on - strand, within AO353_00210at 39.308 kb on - strand, within AO353_00210at 39.308 kb on - strand, within AO353_00210at 39.317 kb on + strand, within AO353_00210at 39.328 kb on + strand, within AO353_00210at 39.329 kb on - strand, within AO353_00210at 39.458 kb on + strand, within AO353_00210at 39.459 kb on - strand, within AO353_00210at 39.481 kb on + strand, within AO353_00210at 39.481 kb on + strand, within AO353_00210at 39.481 kb on + strand, within AO353_00210at 39.481 kb on + strand, within AO353_00210at 39.482 kb on - strand, within AO353_00210at 39.482 kb on - strand, within AO353_00210at 39.482 kb on - strand, within AO353_00210at 39.621 kb on + strandat 39.621 kb on + strandat 39.621 kb on + strandat 39.622 kb on - strandat 39.622 kb on - strandat 39.622 kb on - strandat 39.642 kb on + strandat 39.642 kb on + strandat 39.642 kb on + strandat 39.642 kb on + strandat 39.642 kb on + strandat 39.642 kb on + strandat 39.642 kb on + strandat 39.643 kb on - strandat 39.643 kb on - strandat 39.643 kb on - strandat 39.708 kb on + strand, within AO353_00215at 39.709 kb on - strand, within AO353_00215at 39.789 kb on + strand, within AO353_00215at 39.789 kb on + strand, within AO353_00215at 39.789 kb on + strand, within AO353_00215at 39.789 kb on + strand, within AO353_00215at 39.790 kb on - strand, within AO353_00215at 39.790 kb on - strand, within AO353_00215at 39.790 kb on - strand, within AO353_00215at 39.790 kb on - strand, within AO353_00215at 39.855 kb on + strandat 39.855 kb on + strand, within AO353_00215at 39.855 kb on + strand, within AO353_00215at 39.855 kb on + strand, within AO353_00215at 39.855 kb on + strand, within AO353_00215at 39.855 kb on + strand, within AO353_00215at 39.856 kb on - strand, within AO353_00215at 39.978 kb on + strand, within AO353_00215at 39.978 kb on + strand, within AO353_00215at 40.191 kb on + strand, within AO353_00215at 40.192 kb on - strand, within AO353_00215at 40.250 kb on + strand, within AO353_00215at 40.250 kb on + strand, within AO353_00215at 40.251 kb on - strand, within AO353_00215at 40.251 kb on - strand, within AO353_00215at 40.278 kb on + strand, within AO353_00215at 40.278 kb on + strand, within AO353_00215at 40.278 kb on + strand, within AO353_00215at 40.279 kb on - strand, within AO353_00215at 40.279 kb on - strand, within AO353_00215at 40.279 kb on - strand, within AO353_00215at 40.279 kb on - strand, within AO353_00215at 40.414 kb on + strand, within AO353_00215at 40.415 kb on - strand, within AO353_00215at 40.415 kb on - strand, within AO353_00215at 40.513 kb on - strandat 40.545 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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37,952 - AO353_00200 0.26 -1.2
38,124 + AO353_00200 0.64 +0.8
38,288 + -0.4
38,288 + +0.1
38,289 - -0.3
38,289 - +0.6
38,440 + AO353_00205 0.34 +0.5
38,440 + AO353_00205 0.34 -0.4
38,440 + AO353_00205 0.34 -1.0
38,440 + AO353_00205 0.34 +0.1
38,440 + AO353_00205 0.34 -0.9
38,441 - AO353_00205 0.34 +1.2
38,457 + AO353_00205 0.37 -0.6
38,458 - AO353_00205 0.37 +1.8
38,458 - AO353_00205 0.37 +0.5
38,472 + AO353_00205 0.40 -0.4
38,472 + AO353_00205 0.40 -0.2
38,473 - AO353_00205 0.41 +0.2
38,481 - AO353_00205 0.42 +1.8
38,509 + AO353_00205 0.48 +0.8
38,509 + AO353_00205 0.48 -0.3
38,631 + AO353_00205 0.75 +1.1
38,702 + -0.5
38,703 - -0.6
38,703 - +0.3
38,763 - +0.8
38,797 + +0.6
38,797 + +2.8
38,798 - -1.2
38,798 - +0.4
39,013 + AO353_00210 0.23 -1.2
39,013 + AO353_00210 0.23 -1.3
39,013 + AO353_00210 0.23 -0.9
39,013 + AO353_00210 0.23 -0.0
39,014 - AO353_00210 0.24 -0.8
39,014 - AO353_00210 0.24 -1.5
39,014 - AO353_00210 0.24 -0.2
39,014 - AO353_00210 0.24 -0.2
39,079 + AO353_00210 0.33 +0.4
39,080 + AO353_00210 0.33 +1.8
39,080 - AO353_00210 0.33 -1.6
39,080 - AO353_00210 0.33 -1.0
39,080 - AO353_00210 0.33 +0.8
39,106 + AO353_00210 0.36 -0.5
39,107 - AO353_00210 0.36 -1.0
39,115 + AO353_00210 0.37 -0.2
39,307 + AO353_00210 0.64 -0.3
39,307 + AO353_00210 0.64 +0.1
39,308 - AO353_00210 0.64 -2.3
39,308 - AO353_00210 0.64 -0.2
39,308 - AO353_00210 0.64 -0.6
39,308 - AO353_00210 0.64 -1.1
39,317 + AO353_00210 0.65 -0.3
39,328 + AO353_00210 0.67 +0.6
39,329 - AO353_00210 0.67 +1.4
39,458 + AO353_00210 0.85 -2.6
39,459 - AO353_00210 0.85 -1.3
39,481 + AO353_00210 0.88 -1.6
39,481 + AO353_00210 0.88 -0.1
39,481 + AO353_00210 0.88 +1.1
39,481 + AO353_00210 0.88 -1.0
39,482 - AO353_00210 0.88 -2.3
39,482 - AO353_00210 0.88 -0.2
39,482 - AO353_00210 0.88 -0.2
39,621 + -0.2
39,621 + +2.4
39,621 + +0.1
39,622 - -0.8
39,622 - -1.5
39,622 - -1.5
39,642 + -0.2
39,642 + -1.0
39,642 + +1.4
39,642 + -0.0
39,642 + -0.2
39,642 + -0.6
39,642 + -0.7
39,643 - +0.8
39,643 - -2.0
39,643 - -0.8
39,708 + AO353_00215 0.14 -0.4
39,709 - AO353_00215 0.14 -0.5
39,789 + AO353_00215 0.22 +0.4
39,789 + AO353_00215 0.22 +1.0
39,789 + AO353_00215 0.22 +0.2
39,789 + AO353_00215 0.22 -0.5
39,790 - AO353_00215 0.22 +0.2
39,790 - AO353_00215 0.22 -0.8
39,790 - AO353_00215 0.22 -0.6
39,790 - AO353_00215 0.22 -2.0
39,855 + -0.8
39,855 + AO353_00215 0.29 -0.3
39,855 + AO353_00215 0.29 +0.5
39,855 + AO353_00215 0.29 -0.8
39,855 + AO353_00215 0.29 +0.2
39,855 + AO353_00215 0.29 +0.3
39,856 - AO353_00215 0.29 -1.6
39,978 + AO353_00215 0.41 +0.3
39,978 + AO353_00215 0.41 +0.4
40,191 + AO353_00215 0.62 -0.4
40,192 - AO353_00215 0.62 -0.5
40,250 + AO353_00215 0.67 +1.4
40,250 + AO353_00215 0.67 -1.2
40,251 - AO353_00215 0.67 -1.2
40,251 - AO353_00215 0.67 -1.5
40,278 + AO353_00215 0.70 -0.0
40,278 + AO353_00215 0.70 -1.8
40,278 + AO353_00215 0.70 +0.2
40,279 - AO353_00215 0.70 -0.8
40,279 - AO353_00215 0.70 -0.4
40,279 - AO353_00215 0.70 -0.8
40,279 - AO353_00215 0.70 -1.8
40,414 + AO353_00215 0.83 +0.5
40,415 - AO353_00215 0.84 +1.8
40,415 - AO353_00215 0.84 +0.6
40,513 - -1.0
40,545 + +0.6

Or see this region's nucleotide sequence