Experiment: Gentamicin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00170 and AO353_00175 overlap by 4 nucleotides AO353_00175 and AO353_00180 are separated by 68 nucleotides AO353_00180 and AO353_00185 overlap by 1 nucleotides AO353_00185 and AO353_00190 are separated by 6 nucleotides AO353_00190 and AO353_00195 are separated by 11 nucleotides AO353_00195 and AO353_00200 overlap by 14 nucleotides
AO353_00170: AO353_00170 - lysozyme, at 34,524 to 35,051
_00170
AO353_00175: AO353_00175 - hypothetical protein, at 35,048 to 35,302
_00175
AO353_00180: AO353_00180 - conjugal transfer protein TraR, at 35,371 to 35,580
_00180
AO353_00185: AO353_00185 - phage tail protein, at 35,580 to 36,032
_00185
AO353_00190: AO353_00190 - phage tail protein, at 36,039 to 37,154
_00190
AO353_00195: AO353_00195 - virion morphogenesis protein, at 37,166 to 37,849
_00195
AO353_00200: AO353_00200 - phage tail protein, at 37,836 to 38,288
_00200
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 35.379 kb on + strand at 35.614 kb on + strand at 35.659 kb on + strand, within AO353_00185 at 35.849 kb on + strand, within AO353_00185 at 35.849 kb on + strand, within AO353_00185 at 35.850 kb on - strand, within AO353_00185 at 36.041 kb on - strand at 36.121 kb on + strand at 36.121 kb on + strand at 36.121 kb on + strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.122 kb on - strand at 36.210 kb on - strand, within AO353_00190 at 36.321 kb on + strand, within AO353_00190 at 36.321 kb on + strand, within AO353_00190 at 36.421 kb on + strand, within AO353_00190 at 36.443 kb on - strand, within AO353_00190 at 36.443 kb on - strand, within AO353_00190 at 36.586 kb on - strand, within AO353_00190 at 36.704 kb on - strand, within AO353_00190 at 36.704 kb on - strand, within AO353_00190 at 36.704 kb on - strand, within AO353_00190 at 36.756 kb on + strand, within AO353_00190 at 36.756 kb on + strand, within AO353_00190 at 36.757 kb on - strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.769 kb on + strand, within AO353_00190 at 36.770 kb on - strand, within AO353_00190 at 36.804 kb on - strand, within AO353_00190 at 37.084 kb on + strand at 37.084 kb on + strand at 37.084 kb on + strand at 37.084 kb on + strand at 37.085 kb on - strand at 37.181 kb on + strand at 37.181 kb on + strand at 37.182 kb on - strand at 37.341 kb on + strand, within AO353_00195 at 37.341 kb on + strand, within AO353_00195 at 37.341 kb on + strand, within AO353_00195 at 37.342 kb on - strand, within AO353_00195 at 37.342 kb on - strand, within AO353_00195 at 37.772 kb on + strand, within AO353_00195 at 37.806 kb on - strand at 37.837 kb on + strand at 37.952 kb on - strand, within AO353_00200 at 38.124 kb on + strand, within AO353_00200
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml remove 35,379 + -1.9 35,614 + -0.8 35,659 + AO353_00185 0.17 -0.5 35,849 + AO353_00185 0.59 -1.5 35,849 + AO353_00185 0.59 +2.6 35,850 - AO353_00185 0.60 -2.3 36,041 - +0.1 36,121 + -1.0 36,121 + +0.2 36,121 + +2.0 36,122 - -0.2 36,122 - -1.2 36,122 - -2.0 36,122 - -0.8 36,122 - -0.2 36,210 - AO353_00190 0.15 -1.3 36,321 + AO353_00190 0.25 -0.8 36,321 + AO353_00190 0.25 +0.2 36,421 + AO353_00190 0.34 -0.5 36,443 - AO353_00190 0.36 -0.2 36,443 - AO353_00190 0.36 -1.8 36,586 - AO353_00190 0.49 -1.2 36,704 - AO353_00190 0.60 +0.6 36,704 - AO353_00190 0.60 -1.5 36,704 - AO353_00190 0.60 -1.3 36,756 + AO353_00190 0.64 -0.4 36,756 + AO353_00190 0.64 +2.2 36,757 - AO353_00190 0.64 -1.8 36,769 + AO353_00190 0.65 +1.1 36,769 + AO353_00190 0.65 +0.5 36,769 + AO353_00190 0.65 +0.8 36,769 + AO353_00190 0.65 -0.8 36,770 - AO353_00190 0.66 -0.2 36,804 - AO353_00190 0.69 -2.3 37,084 + -0.2 37,084 + +3.8 37,084 + +0.6 37,084 + -0.2 37,085 - -1.8 37,181 + +0.5 37,181 + -1.3 37,182 - -0.6 37,341 + AO353_00195 0.26 -0.4 37,341 + AO353_00195 0.26 -0.8 37,341 + AO353_00195 0.26 +1.2 37,342 - AO353_00195 0.26 -1.0 37,342 - AO353_00195 0.26 -1.2 37,772 + AO353_00195 0.89 +0.2 37,806 - +0.8 37,837 + -2.2 37,952 - AO353_00200 0.26 -1.2 38,124 + AO353_00200 0.64 +0.8
Or see this region's nucleotide sequence