Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00115

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00105 and AO353_00110 are separated by 28 nucleotidesAO353_00110 and AO353_00115 overlap by 28 nucleotidesAO353_00115 and AO353_00120 overlap by 4 nucleotidesAO353_00120 and AO353_00125 overlap by 4 nucleotides AO353_00105: AO353_00105 - hypothetical protein, at 23,324 to 24,007 _00105 AO353_00110: AO353_00110 - hypothetical protein, at 24,036 to 25,019 _00110 AO353_00115: AO353_00115 - hypothetical protein, at 24,992 to 25,696 _00115 AO353_00120: AO353_00120 - DNA-binding protein, at 25,693 to 26,238 _00120 AO353_00125: AO353_00125 - hypothetical protein, at 26,235 to 27,158 _00125 Position (kb) 24 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 24.048 kb on + strandat 24.048 kb on + strandat 24.048 kb on + strandat 24.059 kb on + strandat 24.081 kb on + strandat 24.081 kb on + strandat 24.081 kb on + strandat 24.159 kb on + strand, within AO353_00110at 24.159 kb on + strand, within AO353_00110at 24.159 kb on + strand, within AO353_00110at 24.210 kb on + strand, within AO353_00110at 24.213 kb on + strand, within AO353_00110at 24.213 kb on + strand, within AO353_00110at 24.213 kb on + strand, within AO353_00110at 24.214 kb on - strand, within AO353_00110at 24.214 kb on - strand, within AO353_00110at 24.222 kb on - strand, within AO353_00110at 24.256 kb on - strand, within AO353_00110at 24.321 kb on + strand, within AO353_00110at 24.321 kb on + strand, within AO353_00110at 24.321 kb on + strand, within AO353_00110at 24.321 kb on + strand, within AO353_00110at 24.321 kb on + strand, within AO353_00110at 24.321 kb on + strand, within AO353_00110at 24.322 kb on - strand, within AO353_00110at 24.322 kb on - strand, within AO353_00110at 24.322 kb on - strand, within AO353_00110at 24.322 kb on - strand, within AO353_00110at 24.322 kb on - strand, within AO353_00110at 24.322 kb on - strand, within AO353_00110at 24.322 kb on - strand, within AO353_00110at 24.322 kb on - strand, within AO353_00110at 24.334 kb on + strand, within AO353_00110at 24.334 kb on + strand, within AO353_00110at 24.334 kb on + strand, within AO353_00110at 24.334 kb on + strand, within AO353_00110at 24.334 kb on + strand, within AO353_00110at 24.334 kb on + strand, within AO353_00110at 24.334 kb on + strand, within AO353_00110at 24.335 kb on - strand, within AO353_00110at 24.335 kb on - strandat 24.335 kb on - strand, within AO353_00110at 24.335 kb on - strand, within AO353_00110at 24.335 kb on - strand, within AO353_00110at 24.335 kb on - strand, within AO353_00110at 24.335 kb on - strand, within AO353_00110at 24.338 kb on + strand, within AO353_00110at 24.338 kb on + strand, within AO353_00110at 24.339 kb on - strand, within AO353_00110at 24.339 kb on - strand, within AO353_00110at 24.339 kb on - strand, within AO353_00110at 24.339 kb on - strand, within AO353_00110at 24.339 kb on - strand, within AO353_00110at 24.339 kb on - strand, within AO353_00110at 24.356 kb on + strand, within AO353_00110at 24.381 kb on + strand, within AO353_00110at 24.382 kb on - strand, within AO353_00110at 24.382 kb on - strand, within AO353_00110at 24.699 kb on - strand, within AO353_00110at 24.700 kb on + strand, within AO353_00110at 24.700 kb on + strand, within AO353_00110at 24.700 kb on + strand, within AO353_00110at 24.700 kb on + strand, within AO353_00110at 24.700 kb on + strand, within AO353_00110at 24.700 kb on + strand, within AO353_00110at 24.700 kb on + strand, within AO353_00110at 24.700 kb on + strand, within AO353_00110at 24.701 kb on - strand, within AO353_00110at 24.701 kb on - strand, within AO353_00110at 24.701 kb on - strand, within AO353_00110at 24.701 kb on - strand, within AO353_00110at 24.701 kb on - strand, within AO353_00110at 24.701 kb on - strand, within AO353_00110at 24.701 kb on - strand, within AO353_00110at 24.721 kb on + strand, within AO353_00110at 24.746 kb on + strand, within AO353_00110at 24.747 kb on - strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.766 kb on + strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.767 kb on - strand, within AO353_00110at 24.825 kb on + strand, within AO353_00110at 24.878 kb on - strand, within AO353_00110at 24.993 kb on + strandat 24.994 kb on - strandat 25.308 kb on + strand, within AO353_00115at 25.335 kb on + strand, within AO353_00115at 25.335 kb on + strand, within AO353_00115at 25.336 kb on - strand, within AO353_00115at 25.509 kb on + strand, within AO353_00115at 25.546 kb on - strand, within AO353_00115at 26.000 kb on + strandat 26.000 kb on + strand, within AO353_00120at 26.000 kb on + strand, within AO353_00120at 26.001 kb on - strand, within AO353_00120at 26.001 kb on - strand, within AO353_00120at 26.067 kb on + strand, within AO353_00120at 26.067 kb on + strand, within AO353_00120at 26.068 kb on - strand, within AO353_00120at 26.227 kb on + strandat 26.228 kb on - strandat 26.228 kb on - strandat 26.239 kb on - strandat 26.524 kb on + strand, within AO353_00125

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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24,048 + +0.8
24,048 + +2.2
24,048 + -0.2
24,059 + -1.2
24,081 + +0.2
24,081 + -0.2
24,081 + -0.8
24,159 + AO353_00110 0.12 -0.3
24,159 + AO353_00110 0.12 -1.2
24,159 + AO353_00110 0.12 +0.8
24,210 + AO353_00110 0.18 +1.3
24,213 + AO353_00110 0.18 +0.4
24,213 + AO353_00110 0.18 -0.8
24,213 + AO353_00110 0.18 +0.8
24,214 - AO353_00110 0.18 +0.0
24,214 - AO353_00110 0.18 +2.2
24,222 - AO353_00110 0.19 -2.6
24,256 - AO353_00110 0.22 +0.1
24,321 + AO353_00110 0.29 +2.4
24,321 + AO353_00110 0.29 +0.1
24,321 + AO353_00110 0.29 -1.2
24,321 + AO353_00110 0.29 +1.3
24,321 + AO353_00110 0.29 +1.1
24,321 + AO353_00110 0.29 +1.1
24,322 - AO353_00110 0.29 -0.8
24,322 - AO353_00110 0.29 -0.2
24,322 - AO353_00110 0.29 -0.8
24,322 - AO353_00110 0.29 -0.2
24,322 - AO353_00110 0.29 +0.2
24,322 - AO353_00110 0.29 -0.8
24,322 - AO353_00110 0.29 -0.2
24,322 - AO353_00110 0.29 -0.8
24,334 + AO353_00110 0.30 -0.4
24,334 + AO353_00110 0.30 -0.2
24,334 + AO353_00110 0.30 -0.8
24,334 + AO353_00110 0.30 +0.8
24,334 + AO353_00110 0.30 +1.6
24,334 + AO353_00110 0.30 +1.4
24,334 + AO353_00110 0.30 -1.3
24,335 - AO353_00110 0.30 +0.5
24,335 - +0.2
24,335 - AO353_00110 0.30 +1.5
24,335 - AO353_00110 0.30 -0.6
24,335 - AO353_00110 0.30 +0.1
24,335 - AO353_00110 0.30 -2.3
24,335 - AO353_00110 0.30 +0.8
24,338 + AO353_00110 0.31 -0.7
24,338 + AO353_00110 0.31 +0.3
24,339 - AO353_00110 0.31 +2.0
24,339 - AO353_00110 0.31 +1.4
24,339 - AO353_00110 0.31 +0.8
24,339 - AO353_00110 0.31 -0.2
24,339 - AO353_00110 0.31 -1.2
24,339 - AO353_00110 0.31 -0.0
24,356 + AO353_00110 0.33 -0.1
24,381 + AO353_00110 0.35 +1.8
24,382 - AO353_00110 0.35 +2.0
24,382 - AO353_00110 0.35 -0.7
24,699 - AO353_00110 0.67 -0.8
24,700 + AO353_00110 0.67 +1.6
24,700 + AO353_00110 0.67 +0.2
24,700 + AO353_00110 0.67 -0.9
24,700 + AO353_00110 0.67 -1.8
24,700 + AO353_00110 0.67 -0.1
24,700 + AO353_00110 0.67 +1.5
24,700 + AO353_00110 0.67 -0.5
24,700 + AO353_00110 0.67 +1.1
24,701 - AO353_00110 0.68 +0.8
24,701 - AO353_00110 0.68 +0.2
24,701 - AO353_00110 0.68 -0.4
24,701 - AO353_00110 0.68 +1.2
24,701 - AO353_00110 0.68 -0.8
24,701 - AO353_00110 0.68 +0.4
24,701 - AO353_00110 0.68 +0.4
24,721 + AO353_00110 0.70 +0.0
24,746 + AO353_00110 0.72 +0.3
24,747 - AO353_00110 0.72 -0.8
24,766 + AO353_00110 0.74 +2.2
24,766 + AO353_00110 0.74 -0.8
24,766 + AO353_00110 0.74 -0.2
24,766 + AO353_00110 0.74 -2.5
24,766 + AO353_00110 0.74 -0.8
24,766 + AO353_00110 0.74 -0.2
24,766 + AO353_00110 0.74 +0.7
24,766 + AO353_00110 0.74 -0.2
24,766 + AO353_00110 0.74 -0.4
24,766 + AO353_00110 0.74 -0.7
24,766 + AO353_00110 0.74 -0.8
24,766 + AO353_00110 0.74 +0.8
24,767 - AO353_00110 0.74 +0.7
24,767 - AO353_00110 0.74 -0.0
24,767 - AO353_00110 0.74 +0.8
24,767 - AO353_00110 0.74 -0.0
24,767 - AO353_00110 0.74 +2.2
24,767 - AO353_00110 0.74 -0.5
24,767 - AO353_00110 0.74 -0.8
24,767 - AO353_00110 0.74 +0.2
24,767 - AO353_00110 0.74 -2.0
24,767 - AO353_00110 0.74 -1.2
24,767 - AO353_00110 0.74 -0.2
24,767 - AO353_00110 0.74 -0.0
24,767 - AO353_00110 0.74 -1.5
24,825 + AO353_00110 0.80 -0.9
24,878 - AO353_00110 0.86 -0.0
24,993 + +1.4
24,994 - +1.7
25,308 + AO353_00115 0.45 +0.2
25,335 + AO353_00115 0.49 +0.3
25,335 + AO353_00115 0.49 +1.1
25,336 - AO353_00115 0.49 -0.2
25,509 + AO353_00115 0.73 +2.4
25,546 - AO353_00115 0.79 +0.8
26,000 + +1.8
26,000 + AO353_00120 0.56 +2.2
26,000 + AO353_00120 0.56 -0.6
26,001 - AO353_00120 0.56 +0.3
26,001 - AO353_00120 0.56 +1.8
26,067 + AO353_00120 0.68 +1.2
26,067 + AO353_00120 0.68 +0.8
26,068 - AO353_00120 0.69 +1.1
26,227 + -0.8
26,228 - -1.5
26,228 - +0.1
26,239 - -0.9
26,524 + AO353_00125 0.31 +0.8

Or see this region's nucleotide sequence