Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00030

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00025 and AO353_00030 are separated by 47 nucleotidesAO353_00030 and AO353_00035 are separated by 329 nucleotides AO353_00025: AO353_00025 - phenazine biosynthesis protein PhzF, at 5,006 to 5,848 _00025 AO353_00030: AO353_00030 - glutathione S-transferase, at 5,896 to 6,594 _00030 AO353_00035: AO353_00035 - GTP-binding protein, at 6,924 to 7,598 _00035 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4.904 kb on + strandat 4.904 kb on + strandat 4.904 kb on + strandat 4.905 kb on - strandat 4.905 kb on - strandat 4.933 kb on + strandat 4.933 kb on + strandat 4.933 kb on + strandat 4.934 kb on - strandat 4.934 kb on - strandat 4.950 kb on + strandat 4.951 kb on - strandat 5.007 kb on + strandat 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.223 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025at 5.859 kb on + strandat 5.859 kb on + strandat 5.869 kb on + strandat 5.962 kb on + strandat 5.962 kb on + strandat 5.962 kb on + strandat 5.963 kb on - strandat 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.059 kb on + strand, within AO353_00030at 6.111 kb on + strand, within AO353_00030at 6.111 kb on + strandat 6.112 kb on - strand, within AO353_00030at 6.112 kb on - strand, within AO353_00030at 6.164 kb on + strand, within AO353_00030at 6.164 kb on + strand, within AO353_00030at 6.165 kb on - strand, within AO353_00030at 6.183 kb on + strand, within AO353_00030at 6.184 kb on - strand, within AO353_00030at 6.257 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.524 kb on + strand, within AO353_00030at 6.525 kb on - strandat 6.532 kb on + strandat 6.532 kb on + strandat 6.533 kb on - strandat 6.669 kb on - strandat 6.669 kb on - strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.676 kb on - strandat 6.676 kb on - strandat 6.676 kb on - strandat 6.702 kb on - strandat 6.702 kb on - strandat 6.755 kb on + strandat 6.755 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.761 kb on - strandat 6.761 kb on - strandat 6.761 kb on - strandat 6.917 kb on + strandat 6.917 kb on + strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.918 kb on - strandat 6.947 kb on + strandat 6.947 kb on + strandat 7.156 kb on + strand, within AO353_00035at 7.156 kb on + strand, within AO353_00035at 7.157 kb on - strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.185 kb on + strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.186 kb on - strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.242 kb on + strand, within AO353_00035at 7.243 kb on - strand, within AO353_00035at 7.248 kb on + strand, within AO353_00035at 7.248 kb on + strand, within AO353_00035at 7.248 kb on + strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.249 kb on - strand, within AO353_00035at 7.351 kb on + strand, within AO353_00035at 7.352 kb on - strand, within AO353_00035at 7.365 kb on + strand, within AO353_00035at 7.365 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.383 kb on + strand, within AO353_00035at 7.384 kb on - strandat 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.384 kb on - strand, within AO353_00035at 7.404 kb on + strand, within AO353_00035at 7.405 kb on - strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.500 kb on + strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.501 kb on - strand, within AO353_00035at 7.554 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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4,904 + +3.0
4,904 + +0.4
4,904 + +0.0
4,905 - -0.4
4,905 - +0.8
4,933 + +1.0
4,933 + +1.4
4,933 + +0.2
4,934 - +0.8
4,934 - +0.8
4,950 + +0.4
4,951 - -0.2
5,007 + -1.5
5,127 + AO353_00025 0.14 +1.2
5,127 + AO353_00025 0.14 +2.4
5,127 + AO353_00025 0.14 +0.6
5,127 + AO353_00025 0.14 -1.1
5,128 - AO353_00025 0.14 -0.2
5,128 - AO353_00025 0.14 -0.5
5,128 - AO353_00025 0.14 +1.2
5,128 - AO353_00025 0.14 +0.2
5,223 - AO353_00025 0.26 -1.2
5,405 - AO353_00025 0.47 -1.4
5,405 - AO353_00025 0.47 -1.5
5,405 - AO353_00025 0.47 -1.8
5,859 + +0.5
5,859 + -0.6
5,869 + +0.6
5,962 + +0.0
5,962 + +0.2
5,962 + -1.2
5,963 - -0.9
6,005 + AO353_00030 0.16 -1.2
6,005 + AO353_00030 0.16 +1.3
6,005 + AO353_00030 0.16 +0.8
6,005 + AO353_00030 0.16 +1.5
6,006 - AO353_00030 0.16 -2.2
6,006 - AO353_00030 0.16 -1.5
6,006 - AO353_00030 0.16 +0.7
6,006 - AO353_00030 0.16 +0.2
6,006 - AO353_00030 0.16 -0.8
6,059 + AO353_00030 0.23 -0.2
6,111 + AO353_00030 0.31 +2.4
6,111 + -1.2
6,112 - AO353_00030 0.31 +0.2
6,112 - AO353_00030 0.31 +0.2
6,164 + AO353_00030 0.38 +0.5
6,164 + AO353_00030 0.38 +2.3
6,165 - AO353_00030 0.38 +0.5
6,183 + AO353_00030 0.41 +0.5
6,184 - AO353_00030 0.41 -0.8
6,257 + AO353_00030 0.52 +1.1
6,308 + AO353_00030 0.59 +0.1
6,308 + AO353_00030 0.59 +1.5
6,308 + AO353_00030 0.59 +1.6
6,524 + AO353_00030 0.90 +1.2
6,525 - -1.5
6,532 + +1.4
6,532 + +1.6
6,533 - -0.1
6,669 - +1.8
6,669 - +1.2
6,673 + +1.4
6,673 + +1.5
6,673 + +0.4
6,673 + +1.3
6,673 + +1.9
6,673 + +2.0
6,674 - +1.7
6,674 - +0.5
6,674 - +0.2
6,674 - +0.2
6,675 + +1.6
6,675 + +2.8
6,675 + +2.0
6,675 + +2.7
6,675 + +3.4
6,675 + +1.4
6,675 + +1.1
6,676 - +0.6
6,676 - -0.2
6,676 - -0.2
6,702 - -0.0
6,702 - -0.8
6,755 + +2.1
6,755 + +1.2
6,760 + +1.8
6,760 + +3.9
6,760 + +0.4
6,760 + +3.2
6,760 + -1.2
6,761 - +1.2
6,761 - -0.8
6,761 - -0.5
6,917 + +3.6
6,917 + +2.6
6,918 - -0.4
6,918 - -0.6
6,918 - +0.8
6,918 - +0.2
6,918 - -0.8
6,918 - -0.0
6,947 + -0.6
6,947 + -1.0
7,156 + AO353_00035 0.34 +0.4
7,156 + AO353_00035 0.34 -2.3
7,157 - AO353_00035 0.35 -0.6
7,185 + AO353_00035 0.39 -0.2
7,185 + AO353_00035 0.39 -0.6
7,185 + AO353_00035 0.39 -1.0
7,185 + AO353_00035 0.39 -1.3
7,185 + AO353_00035 0.39 -1.0
7,185 + AO353_00035 0.39 +0.4
7,185 + AO353_00035 0.39 +0.2
7,186 - AO353_00035 0.39 -1.0
7,186 - AO353_00035 0.39 -1.3
7,186 - AO353_00035 0.39 +0.0
7,186 - AO353_00035 0.39 +0.2
7,186 - AO353_00035 0.39 +0.8
7,242 + AO353_00035 0.47 -1.2
7,242 + AO353_00035 0.47 +0.1
7,242 + AO353_00035 0.47 -0.6
7,242 + AO353_00035 0.47 -0.0
7,242 + AO353_00035 0.47 +0.2
7,243 - AO353_00035 0.47 -2.3
7,248 + AO353_00035 0.48 -0.4
7,248 + AO353_00035 0.48 +0.6
7,248 + AO353_00035 0.48 +0.1
7,249 - AO353_00035 0.48 +0.1
7,249 - AO353_00035 0.48 +0.0
7,249 - AO353_00035 0.48 +0.8
7,249 - AO353_00035 0.48 +0.6
7,249 - AO353_00035 0.48 +0.2
7,249 - AO353_00035 0.48 -0.2
7,351 + AO353_00035 0.63 -0.6
7,352 - AO353_00035 0.63 -1.0
7,365 + AO353_00035 0.65 -1.2
7,365 + AO353_00035 0.65 -0.8
7,383 + AO353_00035 0.68 +0.8
7,383 + AO353_00035 0.68 -0.2
7,383 + AO353_00035 0.68 +1.4
7,383 + AO353_00035 0.68 +0.8
7,383 + AO353_00035 0.68 -0.6
7,383 + AO353_00035 0.68 -2.6
7,383 + AO353_00035 0.68 -1.2
7,384 - -0.2
7,384 - AO353_00035 0.68 -1.3
7,384 - AO353_00035 0.68 +3.2
7,384 - AO353_00035 0.68 +1.4
7,384 - AO353_00035 0.68 -1.8
7,384 - AO353_00035 0.68 +0.8
7,384 - AO353_00035 0.68 +0.8
7,384 - AO353_00035 0.68 -0.0
7,384 - AO353_00035 0.68 -0.8
7,384 - AO353_00035 0.68 +1.6
7,404 + AO353_00035 0.71 +0.3
7,405 - AO353_00035 0.71 +0.2
7,500 + AO353_00035 0.85 -0.3
7,500 + AO353_00035 0.85 +0.2
7,500 + AO353_00035 0.85 -2.0
7,500 + AO353_00035 0.85 -1.0
7,500 + AO353_00035 0.85 +1.2
7,501 - AO353_00035 0.85 +0.5
7,501 - AO353_00035 0.85 -2.1
7,501 - AO353_00035 0.85 -0.9
7,501 - AO353_00035 0.85 -1.2
7,501 - AO353_00035 0.85 +0.4
7,501 - AO353_00035 0.85 +0.2
7,501 - AO353_00035 0.85 +0.4
7,501 - AO353_00035 0.85 +0.4
7,501 - AO353_00035 0.85 -0.8
7,554 + +1.2

Or see this region's nucleotide sequence