Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3074

Experiment: Choline chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3073 and Shewana3_3074 are separated by 63 nucleotidesShewana3_3074 and Shewana3_3075 overlap by 1 nucleotides Shewana3_3073: Shewana3_3073 - citrate transporter (RefSeq), at 3,685,305 to 3,686,615 _3073 Shewana3_3074: Shewana3_3074 - general secretion pathway protein B (RefSeq), at 3,686,679 to 3,687,779 _3074 Shewana3_3075: Shewana3_3075 - peptidoglycan binding domain-containing protein (RefSeq), at 3,687,779 to 3,689,467 _3075 Position (kb) 3686 3687 3688Strain fitness (log2 ratio) -2 -1 0 1at 3686.223 kb on + strand, within Shewana3_3073at 3686.347 kb on + strand, within Shewana3_3073at 3686.387 kb on + strand, within Shewana3_3073at 3686.395 kb on - strand, within Shewana3_3073at 3686.395 kb on - strand, within Shewana3_3073at 3687.099 kb on - strand, within Shewana3_3074at 3687.187 kb on - strand, within Shewana3_3074at 3687.316 kb on + strand, within Shewana3_3074at 3687.612 kb on - strand, within Shewana3_3074at 3687.734 kb on - strandat 3687.811 kb on + strandat 3687.867 kb on + strandat 3688.010 kb on - strand, within Shewana3_3075at 3688.291 kb on + strand, within Shewana3_3075at 3688.292 kb on + strand, within Shewana3_3075at 3688.324 kb on + strand, within Shewana3_3075at 3688.492 kb on - strand, within Shewana3_3075at 3688.684 kb on + strand, within Shewana3_3075

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 300 mM
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3,686,223 + Shewana3_3073 0.70 -2.1
3,686,347 + Shewana3_3073 0.79 -0.8
3,686,387 + Shewana3_3073 0.83 +0.2
3,686,395 - Shewana3_3073 0.83 +0.2
3,686,395 - Shewana3_3073 0.83 +0.2
3,687,099 - Shewana3_3074 0.38 -1.0
3,687,187 - Shewana3_3074 0.46 -2.4
3,687,316 + Shewana3_3074 0.58 -0.8
3,687,612 - Shewana3_3074 0.85 -1.0
3,687,734 - -0.3
3,687,811 + -2.1
3,687,867 + -2.1
3,688,010 - Shewana3_3075 0.14 -1.1
3,688,291 + Shewana3_3075 0.30 +0.2
3,688,292 + Shewana3_3075 0.30 -0.8
3,688,324 + Shewana3_3075 0.32 -1.4
3,688,492 - Shewana3_3075 0.42 +0.2
3,688,684 + Shewana3_3075 0.54 -1.3

Or see this region's nucleotide sequence