Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2311

Experiment: Choline chloride 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2310 and Shewana3_2311 are separated by 125 nucleotidesShewana3_2311 and Shewana3_2312 are separated by 498 nucleotides Shewana3_2310: Shewana3_2310 - glucose/galactose transporter (RefSeq), at 2,777,055 to 2,778,326 _2310 Shewana3_2311: Shewana3_2311 - Alpha-glucosidase (EC 3.2.1.20) (from data), at 2,778,452 to 2,780,074 _2311 Shewana3_2312: Shewana3_2312 - 1-(5-phosphoribosyl)-5- (RefSeq), at 2,780,573 to 2,783,398 _2312 Position (kb) 2778 2779 2780 2781Strain fitness (log2 ratio) -2 -1 0 1 2at 2777.468 kb on - strand, within Shewana3_2310at 2777.493 kb on + strand, within Shewana3_2310at 2777.582 kb on - strand, within Shewana3_2310at 2777.704 kb on - strand, within Shewana3_2310at 2777.768 kb on - strand, within Shewana3_2310at 2777.768 kb on - strand, within Shewana3_2310at 2777.802 kb on + strand, within Shewana3_2310at 2777.892 kb on + strand, within Shewana3_2310at 2777.928 kb on - strand, within Shewana3_2310at 2777.972 kb on + strand, within Shewana3_2310at 2778.036 kb on + strand, within Shewana3_2310at 2778.321 kb on + strandat 2778.433 kb on + strandat 2778.433 kb on + strandat 2778.433 kb on + strandat 2778.441 kb on - strandat 2778.441 kb on - strandat 2778.602 kb on + strandat 2778.635 kb on + strand, within Shewana3_2311at 2778.649 kb on - strand, within Shewana3_2311at 2778.658 kb on - strand, within Shewana3_2311at 2778.856 kb on + strand, within Shewana3_2311at 2778.995 kb on - strand, within Shewana3_2311at 2779.169 kb on - strand, within Shewana3_2311at 2779.191 kb on + strand, within Shewana3_2311at 2779.442 kb on - strand, within Shewana3_2311at 2779.528 kb on - strand, within Shewana3_2311at 2779.844 kb on + strand, within Shewana3_2311at 2780.254 kb on - strandat 2780.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 300 mM
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2,777,468 - Shewana3_2310 0.32 +0.5
2,777,493 + Shewana3_2310 0.34 +0.1
2,777,582 - Shewana3_2310 0.41 -0.0
2,777,704 - Shewana3_2310 0.51 -0.5
2,777,768 - Shewana3_2310 0.56 +1.1
2,777,768 - Shewana3_2310 0.56 +0.7
2,777,802 + Shewana3_2310 0.59 +1.1
2,777,892 + Shewana3_2310 0.66 +0.1
2,777,928 - Shewana3_2310 0.69 -2.3
2,777,972 + Shewana3_2310 0.72 +0.1
2,778,036 + Shewana3_2310 0.77 +0.7
2,778,321 + -0.1
2,778,433 + +0.1
2,778,433 + +0.9
2,778,433 + +0.4
2,778,441 - +0.1
2,778,441 - -1.7
2,778,602 + -0.9
2,778,635 + Shewana3_2311 0.11 +1.3
2,778,649 - Shewana3_2311 0.12 +0.3
2,778,658 - Shewana3_2311 0.13 +1.7
2,778,856 + Shewana3_2311 0.25 +0.6
2,778,995 - Shewana3_2311 0.33 -2.5
2,779,169 - Shewana3_2311 0.44 -0.9
2,779,191 + Shewana3_2311 0.46 +1.8
2,779,442 - Shewana3_2311 0.61 -0.5
2,779,528 - Shewana3_2311 0.66 -0.9
2,779,844 + Shewana3_2311 0.86 +0.1
2,780,254 - -0.8
2,780,367 - +1.1

Or see this region's nucleotide sequence