Experiment: Choline chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0636 and Shewana3_0637 overlap by 4 nucleotides Shewana3_0637 and Shewana3_0638 are separated by 224 nucleotides
Shewana3_0636: Shewana3_0636 - ATPase domain-containing protein (RefSeq), at 749,138 to 751,126
_0636
Shewana3_0637: Shewana3_0637 - two component LuxR family transcriptional regulator (RefSeq), at 751,123 to 751,734
_0637
Shewana3_0638: Shewana3_0638 - smc-like chromosome partitioning protein (DUF3584) <small>(from data)</small>, at 751,959 to 755,630
_0638
Position (kb) 751
752 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 750.249 kb on + strand, within Shewana3_0636 at 750.348 kb on + strand, within Shewana3_0636 at 750.348 kb on + strand, within Shewana3_0636 at 750.374 kb on - strand, within Shewana3_0636 at 750.450 kb on + strand, within Shewana3_0636 at 750.518 kb on - strand, within Shewana3_0636 at 750.548 kb on + strand, within Shewana3_0636 at 750.669 kb on + strand, within Shewana3_0636 at 750.687 kb on + strand, within Shewana3_0636 at 750.806 kb on + strand, within Shewana3_0636 at 750.891 kb on - strand, within Shewana3_0636 at 750.915 kb on - strand, within Shewana3_0636 at 750.927 kb on + strand, within Shewana3_0636 at 750.988 kb on + strand at 750.990 kb on + strand at 751.128 kb on - strand at 751.263 kb on - strand, within Shewana3_0637 at 751.324 kb on - strand, within Shewana3_0637 at 751.338 kb on + strand, within Shewana3_0637 at 751.559 kb on + strand, within Shewana3_0637 at 751.567 kb on - strand, within Shewana3_0637 at 751.586 kb on + strand, within Shewana3_0637 at 751.805 kb on - strand at 751.878 kb on + strand at 751.894 kb on - strand at 751.988 kb on - strand at 752.330 kb on - strand, within Shewana3_0638 at 752.436 kb on + strand, within Shewana3_0638 at 752.495 kb on + strand, within Shewana3_0638 at 752.495 kb on + strand, within Shewana3_0638 at 752.495 kb on + strand, within Shewana3_0638 at 752.495 kb on + strand, within Shewana3_0638 at 752.503 kb on - strand, within Shewana3_0638 at 752.503 kb on - strand, within Shewana3_0638 at 752.503 kb on - strand, within Shewana3_0638 at 752.647 kb on + strand, within Shewana3_0638
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 300 mM remove 750,249 + Shewana3_0636 0.56 -0.1 750,348 + Shewana3_0636 0.61 -0.7 750,348 + Shewana3_0636 0.61 -0.8 750,374 - Shewana3_0636 0.62 +0.6 750,450 + Shewana3_0636 0.66 -0.4 750,518 - Shewana3_0636 0.69 -0.7 750,548 + Shewana3_0636 0.71 +0.8 750,669 + Shewana3_0636 0.77 -0.2 750,687 + Shewana3_0636 0.78 -0.9 750,806 + Shewana3_0636 0.84 +0.3 750,891 - Shewana3_0636 0.88 -0.1 750,915 - Shewana3_0636 0.89 -0.1 750,927 + Shewana3_0636 0.90 +0.6 750,988 + -0.3 750,990 + -0.2 751,128 - +0.7 751,263 - Shewana3_0637 0.23 +0.1 751,324 - Shewana3_0637 0.33 +0.7 751,338 + Shewana3_0637 0.35 -4.8 751,559 + Shewana3_0637 0.71 +0.2 751,567 - Shewana3_0637 0.73 +1.3 751,586 + Shewana3_0637 0.76 -0.3 751,805 - -0.5 751,878 + -0.6 751,894 - -1.1 751,988 - +1.7 752,330 - Shewana3_0638 0.10 +1.6 752,436 + Shewana3_0638 0.13 -1.5 752,495 + Shewana3_0638 0.15 -1.3 752,495 + Shewana3_0638 0.15 -0.4 752,495 + Shewana3_0638 0.15 -2.6 752,495 + Shewana3_0638 0.15 +1.6 752,503 - Shewana3_0638 0.15 +0.6 752,503 - Shewana3_0638 0.15 -0.8 752,503 - Shewana3_0638 0.15 -1.4 752,647 + Shewana3_0638 0.19 +0.6
Or see this region's nucleotide sequence