Experiment: Choline chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0576 and Shewana3_0577 are separated by 82 nucleotides Shewana3_0577 and Shewana3_0578 are separated by 40 nucleotides
Shewana3_0576: Shewana3_0576 - multi-sensor hybrid histidine kinase (RefSeq), at 671,854 to 675,564
_0576
Shewana3_0577: Shewana3_0577 - hypothetical protein (RefSeq), at 675,647 to 678,049
_0577
Shewana3_0578: Shewana3_0578 - serine/threonine protein kinase (RefSeq), at 678,090 to 679,898
_0578
Position (kb) 675
676
677
678
679 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 674.698 kb on - strand, within Shewana3_0576 at 674.709 kb on + strand, within Shewana3_0576 at 674.709 kb on + strand, within Shewana3_0576 at 674.717 kb on - strand, within Shewana3_0576 at 674.767 kb on - strand, within Shewana3_0576 at 675.195 kb on - strand at 675.317 kb on + strand at 675.393 kb on + strand at 675.506 kb on + strand at 675.544 kb on - strand at 675.544 kb on - strand at 675.544 kb on - strand at 675.606 kb on - strand at 675.653 kb on + strand at 675.742 kb on + strand at 675.802 kb on - strand at 675.859 kb on + strand at 675.907 kb on - strand, within Shewana3_0577 at 675.932 kb on + strand, within Shewana3_0577 at 676.010 kb on + strand, within Shewana3_0577 at 676.307 kb on + strand, within Shewana3_0577 at 676.473 kb on - strand, within Shewana3_0577 at 676.478 kb on - strand, within Shewana3_0577 at 676.519 kb on + strand, within Shewana3_0577 at 676.544 kb on + strand, within Shewana3_0577 at 676.585 kb on - strand, within Shewana3_0577 at 676.592 kb on + strand, within Shewana3_0577 at 676.613 kb on - strand, within Shewana3_0577 at 676.668 kb on + strand, within Shewana3_0577 at 676.693 kb on - strand, within Shewana3_0577 at 676.696 kb on + strand, within Shewana3_0577 at 676.762 kb on - strand, within Shewana3_0577 at 676.852 kb on - strand, within Shewana3_0577 at 676.960 kb on - strand, within Shewana3_0577 at 677.020 kb on - strand, within Shewana3_0577 at 677.237 kb on + strand, within Shewana3_0577 at 677.298 kb on - strand, within Shewana3_0577 at 677.325 kb on + strand, within Shewana3_0577 at 677.434 kb on - strand, within Shewana3_0577 at 677.590 kb on - strand, within Shewana3_0577 at 677.631 kb on + strand, within Shewana3_0577 at 677.640 kb on - strand, within Shewana3_0577 at 677.770 kb on - strand, within Shewana3_0577 at 677.776 kb on + strand, within Shewana3_0577 at 677.776 kb on + strand, within Shewana3_0577 at 677.784 kb on - strand, within Shewana3_0577 at 677.860 kb on + strand at 677.905 kb on + strand at 677.913 kb on - strand at 677.958 kb on - strand at 677.976 kb on + strand at 677.984 kb on - strand at 678.017 kb on - strand at 678.017 kb on - strand at 678.133 kb on + strand at 678.361 kb on - strand, within Shewana3_0578 at 678.476 kb on + strand, within Shewana3_0578 at 678.484 kb on - strand, within Shewana3_0578 at 678.488 kb on + strand, within Shewana3_0578 at 678.579 kb on - strand, within Shewana3_0578 at 678.733 kb on - strand, within Shewana3_0578 at 678.768 kb on - strand, within Shewana3_0578 at 678.892 kb on - strand, within Shewana3_0578 at 678.926 kb on - strand, within Shewana3_0578
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 300 mM remove 674,698 - Shewana3_0576 0.77 -2.2 674,709 + Shewana3_0576 0.77 -2.6 674,709 + Shewana3_0576 0.77 -4.6 674,717 - Shewana3_0576 0.77 +0.6 674,767 - Shewana3_0576 0.78 +0.6 675,195 - +0.6 675,317 + -1.0 675,393 + -2.0 675,506 + -1.7 675,544 - +0.6 675,544 - +0.6 675,544 - -0.2 675,606 - -0.1 675,653 + -0.6 675,742 + +0.6 675,802 - +0.4 675,859 + +0.1 675,907 - Shewana3_0577 0.11 -0.1 675,932 + Shewana3_0577 0.12 +0.1 676,010 + Shewana3_0577 0.15 +0.0 676,307 + Shewana3_0577 0.27 +0.0 676,473 - Shewana3_0577 0.34 +0.6 676,478 - Shewana3_0577 0.35 +0.6 676,519 + Shewana3_0577 0.36 -0.1 676,544 + Shewana3_0577 0.37 -0.1 676,585 - Shewana3_0577 0.39 +1.4 676,592 + Shewana3_0577 0.39 +0.7 676,613 - Shewana3_0577 0.40 +1.1 676,668 + Shewana3_0577 0.42 -0.3 676,693 - Shewana3_0577 0.44 -0.6 676,696 + Shewana3_0577 0.44 +0.6 676,762 - Shewana3_0577 0.46 -0.6 676,852 - Shewana3_0577 0.50 +0.4 676,960 - Shewana3_0577 0.55 +1.2 677,020 - Shewana3_0577 0.57 -0.4 677,237 + Shewana3_0577 0.66 +0.3 677,298 - Shewana3_0577 0.69 -0.2 677,325 + Shewana3_0577 0.70 +0.4 677,434 - Shewana3_0577 0.74 +0.2 677,590 - Shewana3_0577 0.81 +0.1 677,631 + Shewana3_0577 0.83 -0.1 677,640 - Shewana3_0577 0.83 +1.6 677,770 - Shewana3_0577 0.88 -0.8 677,776 + Shewana3_0577 0.89 +0.6 677,776 + Shewana3_0577 0.89 -0.1 677,784 - Shewana3_0577 0.89 -0.1 677,860 + -0.0 677,905 + -0.1 677,913 - -1.0 677,958 - +0.6 677,976 + +0.6 677,984 - -0.0 678,017 - -0.4 678,017 - -0.5 678,133 + -0.0 678,361 - Shewana3_0578 0.15 +0.1 678,476 + Shewana3_0578 0.21 -0.0 678,484 - Shewana3_0578 0.22 -1.0 678,488 + Shewana3_0578 0.22 -2.4 678,579 - Shewana3_0578 0.27 -0.1 678,733 - Shewana3_0578 0.36 +0.2 678,768 - Shewana3_0578 0.37 -0.1 678,892 - Shewana3_0578 0.44 -3.3 678,926 - Shewana3_0578 0.46 +0.6
Or see this region's nucleotide sequence