Experiment: Choline chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0347 and Shewana3_0348 are separated by 178 nucleotides Shewana3_0348 and Shewana3_0349 are separated by 387 nucleotides
Shewana3_0347: Shewana3_0347 - hypothetical protein (RefSeq), at 379,699 to 380,595
_0347
Shewana3_0348: Shewana3_0348 - ATP-dependent DNA helicase RecG (RefSeq), at 380,774 to 382,864
_0348
Shewana3_0349: Shewana3_0349 - periplasmic sugar-binding protein, putative (RefSeq), at 383,252 to 384,298
_0349
Position (kb) 380
381
382
383 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 379.792 kb on + strand, within Shewana3_0347 at 379.800 kb on - strand, within Shewana3_0347 at 379.806 kb on - strand, within Shewana3_0347 at 379.848 kb on + strand, within Shewana3_0347 at 379.854 kb on - strand, within Shewana3_0347 at 379.856 kb on - strand, within Shewana3_0347 at 379.875 kb on - strand, within Shewana3_0347 at 379.935 kb on - strand, within Shewana3_0347 at 379.936 kb on - strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.986 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 380.135 kb on + strand, within Shewana3_0347 at 380.255 kb on - strand, within Shewana3_0347 at 380.271 kb on + strand, within Shewana3_0347 at 380.351 kb on - strand, within Shewana3_0347 at 380.419 kb on - strand, within Shewana3_0347 at 380.637 kb on - strand at 380.670 kb on - strand at 380.701 kb on - strand at 380.712 kb on + strand at 380.767 kb on - strand at 380.938 kb on + strand at 380.945 kb on + strand at 381.030 kb on - strand, within Shewana3_0348 at 381.083 kb on - strand, within Shewana3_0348 at 381.108 kb on - strand, within Shewana3_0348 at 381.210 kb on - strand, within Shewana3_0348 at 381.234 kb on + strand, within Shewana3_0348 at 381.646 kb on + strand, within Shewana3_0348 at 381.654 kb on - strand, within Shewana3_0348 at 381.654 kb on - strand, within Shewana3_0348 at 381.659 kb on - strand, within Shewana3_0348 at 381.793 kb on - strand, within Shewana3_0348 at 381.794 kb on - strand, within Shewana3_0348 at 381.888 kb on + strand, within Shewana3_0348 at 381.968 kb on + strand, within Shewana3_0348 at 381.976 kb on - strand, within Shewana3_0348 at 381.976 kb on - strand, within Shewana3_0348 at 382.106 kb on + strand, within Shewana3_0348 at 382.135 kb on + strand, within Shewana3_0348 at 382.143 kb on - strand, within Shewana3_0348 at 382.143 kb on - strand, within Shewana3_0348 at 382.156 kb on + strand, within Shewana3_0348 at 382.156 kb on + strand, within Shewana3_0348 at 382.171 kb on + strand, within Shewana3_0348 at 382.174 kb on - strand, within Shewana3_0348 at 382.305 kb on + strand, within Shewana3_0348 at 382.360 kb on + strand, within Shewana3_0348 at 382.360 kb on + strand, within Shewana3_0348 at 382.360 kb on + strand, within Shewana3_0348 at 382.368 kb on - strand, within Shewana3_0348 at 382.368 kb on - strand, within Shewana3_0348 at 382.547 kb on - strand, within Shewana3_0348 at 382.547 kb on - strand, within Shewana3_0348 at 382.547 kb on - strand, within Shewana3_0348 at 382.578 kb on - strand, within Shewana3_0348 at 382.579 kb on - strand, within Shewana3_0348 at 382.590 kb on + strand, within Shewana3_0348 at 382.590 kb on + strand, within Shewana3_0348 at 382.613 kb on - strand, within Shewana3_0348 at 382.613 kb on - strand, within Shewana3_0348 at 382.645 kb on - strand, within Shewana3_0348 at 382.678 kb on - strand at 382.722 kb on + strand at 382.727 kb on + strand at 382.735 kb on - strand at 382.735 kb on - strand at 382.751 kb on + strand at 382.751 kb on + strand at 382.868 kb on + strand at 382.893 kb on + strand at 382.901 kb on + strand at 382.901 kb on + strand at 382.901 kb on - strand at 382.901 kb on - strand at 382.903 kb on - strand at 382.903 kb on - strand at 382.903 kb on - strand at 382.916 kb on + strand at 382.919 kb on - strand at 382.921 kb on + strand at 382.940 kb on + strand at 382.940 kb on + strand at 382.947 kb on - strand at 382.947 kb on - strand at 382.949 kb on + strand at 382.995 kb on - strand at 382.998 kb on + strand at 383.115 kb on + strand at 383.115 kb on + strand at 383.196 kb on + strand at 383.196 kb on + strand at 383.196 kb on + strand at 383.204 kb on - strand at 383.204 kb on - strand at 383.204 kb on - strand at 383.220 kb on + strand at 383.239 kb on + strand at 383.239 kb on + strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.263 kb on + strand at 383.263 kb on + strand at 383.271 kb on - strand at 383.271 kb on - strand at 383.284 kb on + strand at 383.335 kb on + strand at 383.383 kb on + strand, within Shewana3_0349 at 383.383 kb on + strand, within Shewana3_0349 at 383.391 kb on - strand, within Shewana3_0349 at 383.406 kb on - strand, within Shewana3_0349 at 383.580 kb on + strand, within Shewana3_0349 at 383.587 kb on - strand, within Shewana3_0349 at 383.587 kb on - strand, within Shewana3_0349 at 383.605 kb on + strand, within Shewana3_0349 at 383.701 kb on - strand, within Shewana3_0349 at 383.741 kb on + strand, within Shewana3_0349 at 383.749 kb on - strand, within Shewana3_0349 at 383.788 kb on + strand, within Shewana3_0349 at 383.796 kb on - strand, within Shewana3_0349 at 383.799 kb on + strand, within Shewana3_0349 at 383.807 kb on - strand, within Shewana3_0349 at 383.807 kb on - strand, within Shewana3_0349 at 383.844 kb on + strand, within Shewana3_0349
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 300 mM remove 379,792 + Shewana3_0347 0.10 -0.4 379,800 - Shewana3_0347 0.11 +0.1 379,806 - Shewana3_0347 0.12 -0.4 379,848 + Shewana3_0347 0.17 -0.5 379,854 - Shewana3_0347 0.17 -0.5 379,856 - Shewana3_0347 0.18 +0.2 379,875 - Shewana3_0347 0.20 -0.5 379,935 - Shewana3_0347 0.26 -0.5 379,936 - Shewana3_0347 0.26 -0.6 379,974 + Shewana3_0347 0.31 -0.7 379,974 + Shewana3_0347 0.31 -0.2 379,982 - Shewana3_0347 0.32 -0.3 379,982 - Shewana3_0347 0.32 +0.5 379,982 - Shewana3_0347 0.32 -0.4 379,982 - Shewana3_0347 0.32 -0.4 379,982 - Shewana3_0347 0.32 -0.7 379,982 - Shewana3_0347 0.32 -0.5 379,986 + Shewana3_0347 0.32 -0.3 379,993 + Shewana3_0347 0.33 -0.4 379,993 + Shewana3_0347 0.33 -1.0 379,994 - Shewana3_0347 0.33 -0.2 379,994 - Shewana3_0347 0.33 -0.5 380,135 + Shewana3_0347 0.49 -0.3 380,255 - Shewana3_0347 0.62 +0.5 380,271 + Shewana3_0347 0.64 -0.2 380,351 - Shewana3_0347 0.73 -1.0 380,419 - Shewana3_0347 0.80 -0.2 380,637 - +0.0 380,670 - -0.6 380,701 - +0.1 380,712 + -0.2 380,767 - +0.2 380,938 + +0.4 380,945 + -1.4 381,030 - Shewana3_0348 0.12 -2.9 381,083 - Shewana3_0348 0.15 -2.4 381,108 - Shewana3_0348 0.16 -2.2 381,210 - Shewana3_0348 0.21 -2.2 381,234 + Shewana3_0348 0.22 -1.3 381,646 + Shewana3_0348 0.42 -1.3 381,654 - Shewana3_0348 0.42 -1.9 381,654 - Shewana3_0348 0.42 -2.4 381,659 - Shewana3_0348 0.42 -3.6 381,793 - Shewana3_0348 0.49 -1.1 381,794 - Shewana3_0348 0.49 -1.3 381,888 + Shewana3_0348 0.53 -2.4 381,968 + Shewana3_0348 0.57 -0.9 381,976 - Shewana3_0348 0.57 -0.3 381,976 - Shewana3_0348 0.57 -2.0 382,106 + Shewana3_0348 0.64 -1.6 382,135 + Shewana3_0348 0.65 -1.8 382,143 - Shewana3_0348 0.65 -4.2 382,143 - Shewana3_0348 0.65 -1.8 382,156 + Shewana3_0348 0.66 -2.5 382,156 + Shewana3_0348 0.66 -2.5 382,171 + Shewana3_0348 0.67 -2.7 382,174 - Shewana3_0348 0.67 -1.3 382,305 + Shewana3_0348 0.73 -2.2 382,360 + Shewana3_0348 0.76 -1.0 382,360 + Shewana3_0348 0.76 -1.7 382,360 + Shewana3_0348 0.76 -0.1 382,368 - Shewana3_0348 0.76 -1.3 382,368 - Shewana3_0348 0.76 -2.8 382,547 - Shewana3_0348 0.85 -2.4 382,547 - Shewana3_0348 0.85 -2.2 382,547 - Shewana3_0348 0.85 -2.3 382,578 - Shewana3_0348 0.86 -2.6 382,579 - Shewana3_0348 0.86 -1.9 382,590 + Shewana3_0348 0.87 -1.0 382,590 + Shewana3_0348 0.87 -2.2 382,613 - Shewana3_0348 0.88 -4.0 382,613 - Shewana3_0348 0.88 -0.9 382,645 - Shewana3_0348 0.89 -1.9 382,678 - -3.4 382,722 + -0.3 382,727 + -1.3 382,735 - -1.6 382,735 - +0.7 382,751 + -0.3 382,751 + -0.9 382,868 + -0.3 382,893 + +0.1 382,901 + -1.0 382,901 + -0.9 382,901 - +0.6 382,901 - +0.1 382,903 - -0.6 382,903 - +0.3 382,903 - -0.6 382,916 + +1.7 382,919 - +0.4 382,921 + -0.6 382,940 + -0.6 382,940 + -1.0 382,947 - +0.1 382,947 - +1.0 382,949 + +0.0 382,995 - +0.1 382,998 + -0.9 383,115 + -0.3 383,115 + +0.7 383,196 + +1.4 383,196 + -0.0 383,196 + +0.8 383,204 - +0.4 383,204 - +0.7 383,204 - -0.7 383,220 + +0.8 383,239 + +1.0 383,239 + +0.0 383,242 - -2.1 383,242 - +1.2 383,242 - +0.5 383,242 - +0.2 383,242 - -0.9 383,263 + -0.7 383,263 + -0.5 383,271 - -0.1 383,271 - +0.7 383,284 + -0.2 383,335 + +0.7 383,383 + Shewana3_0349 0.13 +1.0 383,383 + Shewana3_0349 0.13 +0.7 383,391 - Shewana3_0349 0.13 +0.7 383,406 - Shewana3_0349 0.15 +0.7 383,580 + Shewana3_0349 0.31 -0.5 383,587 - Shewana3_0349 0.32 -0.5 383,587 - Shewana3_0349 0.32 +0.4 383,605 + Shewana3_0349 0.34 -0.2 383,701 - Shewana3_0349 0.43 -0.7 383,741 + Shewana3_0349 0.47 -0.4 383,749 - Shewana3_0349 0.47 +1.3 383,788 + Shewana3_0349 0.51 +0.8 383,796 - Shewana3_0349 0.52 -0.4 383,799 + Shewana3_0349 0.52 -0.4 383,807 - Shewana3_0349 0.53 +0.0 383,807 - Shewana3_0349 0.53 +0.5 383,844 + Shewana3_0349 0.57 +0.2
Or see this region's nucleotide sequence