Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06133

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06132 and H281DRAFT_06133 are separated by 17 nucleotidesH281DRAFT_06133 and H281DRAFT_06134 are separated by 462 nucleotides H281DRAFT_06132: H281DRAFT_06132 - acetyl-CoA C-acetyltransferase, at 20,711 to 21,898 _06132 H281DRAFT_06133: H281DRAFT_06133 - hypothetical protein, at 21,916 to 23,049 _06133 H281DRAFT_06134: H281DRAFT_06134 - hypothetical protein, at 23,512 to 24,057 _06134 H281DRAFT_06135: H281DRAFT_06135 - hypothetical protein, at 23,878 to 24,783 _06135 Position (kb) 21 22 23 24Strain fitness (log2 ratio) -2 -1 0 1at 21.042 kb on + strand, within H281DRAFT_06132at 21.084 kb on - strand, within H281DRAFT_06132at 21.142 kb on + strand, within H281DRAFT_06132at 21.142 kb on + strand, within H281DRAFT_06132at 21.143 kb on - strand, within H281DRAFT_06132at 21.143 kb on - strand, within H281DRAFT_06132at 21.143 kb on - strand, within H281DRAFT_06132at 21.143 kb on - strand, within H281DRAFT_06132at 21.170 kb on + strand, within H281DRAFT_06132at 21.171 kb on - strand, within H281DRAFT_06132at 21.360 kb on + strand, within H281DRAFT_06132at 21.360 kb on + strand, within H281DRAFT_06132at 21.364 kb on + strand, within H281DRAFT_06132at 21.365 kb on - strand, within H281DRAFT_06132at 21.451 kb on + strand, within H281DRAFT_06132at 21.452 kb on - strand, within H281DRAFT_06132at 21.553 kb on + strand, within H281DRAFT_06132at 21.560 kb on + strand, within H281DRAFT_06132at 21.560 kb on + strand, within H281DRAFT_06132at 21.560 kb on + strand, within H281DRAFT_06132at 21.561 kb on - strand, within H281DRAFT_06132at 21.640 kb on - strand, within H281DRAFT_06132at 21.640 kb on - strandat 21.787 kb on + strandat 21.920 kb on + strandat 21.920 kb on + strandat 21.921 kb on - strandat 21.924 kb on + strandat 21.924 kb on + strandat 21.925 kb on - strandat 22.105 kb on + strand, within H281DRAFT_06133at 22.106 kb on - strand, within H281DRAFT_06133at 22.106 kb on - strand, within H281DRAFT_06133at 22.107 kb on + strand, within H281DRAFT_06133at 22.107 kb on + strand, within H281DRAFT_06133at 22.108 kb on - strand, within H281DRAFT_06133at 22.108 kb on - strand, within H281DRAFT_06133at 22.108 kb on - strand, within H281DRAFT_06133at 22.161 kb on + strand, within H281DRAFT_06133at 22.161 kb on + strand, within H281DRAFT_06133at 22.161 kb on + strand, within H281DRAFT_06133at 22.161 kb on + strand, within H281DRAFT_06133at 22.162 kb on - strand, within H281DRAFT_06133at 22.162 kb on - strand, within H281DRAFT_06133at 22.170 kb on - strand, within H281DRAFT_06133at 22.211 kb on - strand, within H281DRAFT_06133at 22.380 kb on + strand, within H281DRAFT_06133at 22.381 kb on - strand, within H281DRAFT_06133at 22.381 kb on - strand, within H281DRAFT_06133at 22.381 kb on - strand, within H281DRAFT_06133at 22.393 kb on + strand, within H281DRAFT_06133at 22.394 kb on - strand, within H281DRAFT_06133at 22.639 kb on - strand, within H281DRAFT_06133at 22.665 kb on + strand, within H281DRAFT_06133at 22.700 kb on - strand, within H281DRAFT_06133at 22.700 kb on - strand, within H281DRAFT_06133at 22.937 kb on - strandat 22.937 kb on - strandat 22.966 kb on + strandat 23.047 kb on + strandat 23.083 kb on + strandat 23.113 kb on + strandat 23.113 kb on + strandat 23.114 kb on - strandat 23.315 kb on + strandat 23.316 kb on - strandat 23.497 kb on + strandat 23.497 kb on + strandat 23.619 kb on + strand, within H281DRAFT_06134at 23.699 kb on - strandat 23.699 kb on - strand, within H281DRAFT_06134at 23.879 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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21,042 + H281DRAFT_06132 0.28 -0.5
21,084 - H281DRAFT_06132 0.31 -0.7
21,142 + H281DRAFT_06132 0.36 +0.5
21,142 + H281DRAFT_06132 0.36 +0.3
21,143 - H281DRAFT_06132 0.36 +0.4
21,143 - H281DRAFT_06132 0.36 +0.2
21,143 - H281DRAFT_06132 0.36 +0.3
21,143 - H281DRAFT_06132 0.36 -0.3
21,170 + H281DRAFT_06132 0.39 +0.8
21,171 - H281DRAFT_06132 0.39 +0.8
21,360 + H281DRAFT_06132 0.55 +0.8
21,360 + H281DRAFT_06132 0.55 -2.2
21,364 + H281DRAFT_06132 0.55 +0.2
21,365 - H281DRAFT_06132 0.55 -0.2
21,451 + H281DRAFT_06132 0.62 -0.7
21,452 - H281DRAFT_06132 0.62 +0.1
21,553 + H281DRAFT_06132 0.71 +0.3
21,560 + H281DRAFT_06132 0.71 +0.9
21,560 + H281DRAFT_06132 0.71 +0.3
21,560 + H281DRAFT_06132 0.71 -0.5
21,561 - H281DRAFT_06132 0.72 -0.0
21,640 - H281DRAFT_06132 0.78 +0.4
21,640 - -0.4
21,787 + +0.7
21,920 + -0.9
21,920 + -0.6
21,921 - -0.2
21,924 + +0.0
21,924 + -0.7
21,925 - -0.2
22,105 + H281DRAFT_06133 0.17 +0.0
22,106 - H281DRAFT_06133 0.17 -0.2
22,106 - H281DRAFT_06133 0.17 -0.4
22,107 + H281DRAFT_06133 0.17 -0.5
22,107 + H281DRAFT_06133 0.17 +0.5
22,108 - H281DRAFT_06133 0.17 +0.1
22,108 - H281DRAFT_06133 0.17 +0.8
22,108 - H281DRAFT_06133 0.17 +1.3
22,161 + H281DRAFT_06133 0.22 -0.4
22,161 + H281DRAFT_06133 0.22 -0.1
22,161 + H281DRAFT_06133 0.22 +0.6
22,161 + H281DRAFT_06133 0.22 +1.1
22,162 - H281DRAFT_06133 0.22 -1.0
22,162 - H281DRAFT_06133 0.22 +0.1
22,170 - H281DRAFT_06133 0.22 -0.7
22,211 - H281DRAFT_06133 0.26 +0.5
22,380 + H281DRAFT_06133 0.41 +0.1
22,381 - H281DRAFT_06133 0.41 -0.9
22,381 - H281DRAFT_06133 0.41 -1.2
22,381 - H281DRAFT_06133 0.41 +0.2
22,393 + H281DRAFT_06133 0.42 -0.7
22,394 - H281DRAFT_06133 0.42 +0.3
22,639 - H281DRAFT_06133 0.64 +0.1
22,665 + H281DRAFT_06133 0.66 +0.2
22,700 - H281DRAFT_06133 0.69 +0.2
22,700 - H281DRAFT_06133 0.69 -0.1
22,937 - -0.2
22,937 - -1.2
22,966 + +0.2
23,047 + -1.0
23,083 + +0.1
23,113 + +0.1
23,113 + -0.1
23,114 - +0.6
23,315 + -0.3
23,316 - +0.3
23,497 + -0.5
23,497 + +0.5
23,619 + H281DRAFT_06134 0.20 +0.5
23,699 - +1.2
23,699 - H281DRAFT_06134 0.34 +0.3
23,879 + +0.6

Or see this region's nucleotide sequence