Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05362

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05361 and H281DRAFT_05362 are separated by 333 nucleotidesH281DRAFT_05362 and H281DRAFT_05363 are separated by 36 nucleotidesH281DRAFT_05363 and H281DRAFT_05364 are separated by 14 nucleotides H281DRAFT_05361: H281DRAFT_05361 - type VI secretion system protein VasD, at 114,644 to 115,309 _05361 H281DRAFT_05362: H281DRAFT_05362 - Tetratricopeptide repeat-containing protein, at 115,643 to 116,329 _05362 H281DRAFT_05363: H281DRAFT_05363 - type VI secretion system protein ImpB, at 116,366 to 116,914 _05363 H281DRAFT_05364: H281DRAFT_05364 - type VI secretion system protein ImpC, at 116,929 to 118,419 _05364 Position (kb) 115 116 117Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 114.645 kb on + strandat 114.646 kb on - strandat 114.646 kb on - strandat 114.655 kb on + strandat 114.655 kb on + strandat 114.655 kb on + strandat 114.656 kb on - strandat 114.656 kb on - strandat 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.742 kb on + strand, within H281DRAFT_05361at 114.743 kb on - strand, within H281DRAFT_05361at 114.743 kb on - strand, within H281DRAFT_05361at 114.758 kb on + strand, within H281DRAFT_05361at 114.864 kb on - strand, within H281DRAFT_05361at 114.882 kb on + strand, within H281DRAFT_05361at 114.882 kb on + strandat 114.882 kb on + strand, within H281DRAFT_05361at 114.939 kb on - strand, within H281DRAFT_05361at 114.939 kb on - strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.014 kb on + strand, within H281DRAFT_05361at 115.077 kb on + strand, within H281DRAFT_05361at 115.079 kb on + strand, within H281DRAFT_05361at 115.079 kb on + strand, within H281DRAFT_05361at 115.080 kb on - strand, within H281DRAFT_05361at 115.080 kb on - strand, within H281DRAFT_05361at 115.080 kb on - strand, within H281DRAFT_05361at 115.239 kb on - strand, within H281DRAFT_05361at 115.272 kb on + strandat 115.272 kb on + strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.273 kb on - strandat 115.303 kb on + strandat 115.304 kb on - strandat 115.304 kb on - strandat 115.304 kb on - strandat 115.322 kb on + strandat 115.346 kb on - strandat 115.346 kb on - strandat 115.366 kb on - strandat 115.392 kb on - strandat 115.403 kb on + strandat 115.403 kb on + strandat 115.403 kb on + strandat 115.404 kb on - strandat 115.404 kb on - strandat 115.404 kb on - strandat 115.509 kb on - strandat 115.565 kb on + strandat 115.566 kb on - strandat 115.566 kb on - strandat 115.568 kb on + strandat 115.568 kb on + strandat 115.570 kb on + strandat 115.659 kb on + strandat 115.660 kb on - strandat 115.660 kb on - strandat 115.662 kb on + strandat 115.663 kb on - strandat 115.669 kb on - strandat 115.669 kb on - strandat 115.677 kb on + strandat 115.678 kb on - strandat 115.751 kb on - strand, within H281DRAFT_05362at 115.751 kb on - strand, within H281DRAFT_05362at 115.754 kb on - strand, within H281DRAFT_05362at 115.774 kb on + strand, within H281DRAFT_05362at 115.774 kb on + strand, within H281DRAFT_05362at 115.775 kb on - strand, within H281DRAFT_05362at 115.775 kb on - strand, within H281DRAFT_05362at 115.779 kb on + strand, within H281DRAFT_05362at 115.779 kb on + strand, within H281DRAFT_05362at 115.817 kb on + strand, within H281DRAFT_05362at 115.818 kb on - strand, within H281DRAFT_05362at 115.818 kb on - strandat 115.898 kb on + strand, within H281DRAFT_05362at 115.898 kb on + strand, within H281DRAFT_05362at 115.899 kb on - strand, within H281DRAFT_05362at 115.969 kb on - strand, within H281DRAFT_05362at 115.969 kb on - strand, within H281DRAFT_05362at 116.184 kb on + strand, within H281DRAFT_05362at 116.185 kb on - strand, within H281DRAFT_05362at 116.385 kb on + strandat 116.385 kb on + strandat 116.385 kb on + strandat 116.386 kb on - strandat 116.432 kb on + strand, within H281DRAFT_05363at 116.432 kb on + strand, within H281DRAFT_05363at 116.432 kb on + strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.433 kb on - strand, within H281DRAFT_05363at 116.912 kb on + strandat 116.912 kb on + strandat 116.913 kb on - strandat 116.916 kb on + strandat 116.917 kb on - strandat 116.917 kb on - strandat 116.917 kb on - strandat 117.236 kb on - strand, within H281DRAFT_05364at 117.236 kb on - strand, within H281DRAFT_05364

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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114,645 + +0.5
114,646 - +0.6
114,646 - -0.3
114,655 + +0.2
114,655 + +0.4
114,655 + -0.0
114,656 - -0.4
114,656 - -0.2
114,742 + H281DRAFT_05361 0.15 -0.4
114,742 + H281DRAFT_05361 0.15 -0.2
114,742 + H281DRAFT_05361 0.15 +0.3
114,742 + H281DRAFT_05361 0.15 -0.6
114,742 + H281DRAFT_05361 0.15 -0.0
114,743 - H281DRAFT_05361 0.15 +0.9
114,743 - H281DRAFT_05361 0.15 -0.0
114,758 + H281DRAFT_05361 0.17 -0.2
114,864 - H281DRAFT_05361 0.33 +0.2
114,882 + H281DRAFT_05361 0.36 -0.0
114,882 + +0.3
114,882 + H281DRAFT_05361 0.36 +0.7
114,939 - H281DRAFT_05361 0.44 -4.1
114,939 - H281DRAFT_05361 0.44 -2.1
115,014 + H281DRAFT_05361 0.56 -0.1
115,014 + H281DRAFT_05361 0.56 +2.5
115,014 + H281DRAFT_05361 0.56 -0.7
115,014 + H281DRAFT_05361 0.56 -0.5
115,077 + H281DRAFT_05361 0.65 -0.3
115,079 + H281DRAFT_05361 0.65 -0.5
115,079 + H281DRAFT_05361 0.65 +0.3
115,080 - H281DRAFT_05361 0.65 +0.1
115,080 - H281DRAFT_05361 0.65 -0.3
115,080 - H281DRAFT_05361 0.65 +0.2
115,239 - H281DRAFT_05361 0.89 +0.5
115,272 + +0.5
115,272 + -0.5
115,273 - -0.2
115,273 - -1.8
115,273 - -0.5
115,273 - -0.1
115,273 - -0.5
115,303 + +0.4
115,304 - -0.9
115,304 - +0.6
115,304 - -0.1
115,322 + +0.2
115,346 - -0.4
115,346 - +0.8
115,366 - +0.6
115,392 - -0.2
115,403 + -0.7
115,403 + +0.3
115,403 + -0.4
115,404 - +0.6
115,404 - -0.5
115,404 - +0.4
115,509 - +0.4
115,565 + +0.3
115,566 - -0.3
115,566 - -0.0
115,568 + -0.6
115,568 + +0.2
115,570 + +0.3
115,659 + +0.3
115,660 - +0.5
115,660 - +0.3
115,662 + +0.4
115,663 - -0.6
115,669 - -0.6
115,669 - -0.2
115,677 + +0.1
115,678 - +0.1
115,751 - H281DRAFT_05362 0.16 +0.2
115,751 - H281DRAFT_05362 0.16 +0.3
115,754 - H281DRAFT_05362 0.16 +0.4
115,774 + H281DRAFT_05362 0.19 +0.5
115,774 + H281DRAFT_05362 0.19 -0.5
115,775 - H281DRAFT_05362 0.19 -0.1
115,775 - H281DRAFT_05362 0.19 +0.3
115,779 + H281DRAFT_05362 0.20 +0.4
115,779 + H281DRAFT_05362 0.20 +0.5
115,817 + H281DRAFT_05362 0.25 +0.0
115,818 - H281DRAFT_05362 0.25 -1.1
115,818 - +0.2
115,898 + H281DRAFT_05362 0.37 +0.2
115,898 + H281DRAFT_05362 0.37 -0.4
115,899 - H281DRAFT_05362 0.37 -0.2
115,969 - H281DRAFT_05362 0.47 -0.4
115,969 - H281DRAFT_05362 0.47 +0.2
116,184 + H281DRAFT_05362 0.79 -0.9
116,185 - H281DRAFT_05362 0.79 -0.7
116,385 + +0.5
116,385 + -0.2
116,385 + -0.1
116,386 - +0.2
116,432 + H281DRAFT_05363 0.12 +0.2
116,432 + H281DRAFT_05363 0.12 +0.1
116,432 + H281DRAFT_05363 0.12 +0.0
116,433 - H281DRAFT_05363 0.12 -0.2
116,433 - H281DRAFT_05363 0.12 -0.1
116,433 - H281DRAFT_05363 0.12 -0.9
116,433 - H281DRAFT_05363 0.12 +1.3
116,433 - H281DRAFT_05363 0.12 -0.4
116,433 - H281DRAFT_05363 0.12 -0.1
116,433 - H281DRAFT_05363 0.12 +0.3
116,433 - H281DRAFT_05363 0.12 -0.7
116,433 - H281DRAFT_05363 0.12 -0.2
116,912 + -0.5
116,912 + -0.7
116,913 - +2.8
116,916 + -0.3
116,917 - -0.3
116,917 - -0.1
116,917 - -0.2
117,236 - H281DRAFT_05364 0.21 -0.4
117,236 - H281DRAFT_05364 0.21 +0.3

Or see this region's nucleotide sequence