Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04735

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04733 and H281DRAFT_04734 are separated by 173 nucleotidesH281DRAFT_04734 and H281DRAFT_04735 are separated by 139 nucleotidesH281DRAFT_04735 and H281DRAFT_04736 are separated by 342 nucleotides H281DRAFT_04733: H281DRAFT_04733 - Protein of unknown function (DUF3318), at 142,073 to 142,546 _04733 H281DRAFT_04734: H281DRAFT_04734 - Uncharacterized membrane protein YqjE, at 142,720 to 143,106 _04734 H281DRAFT_04735: H281DRAFT_04735 - Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family, at 143,246 to 143,548 _04735 H281DRAFT_04736: H281DRAFT_04736 - Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin), at 143,891 to 144,529 _04736 Position (kb) 143 144Strain fitness (log2 ratio) -2 -1 0 1 2at 142.315 kb on + strand, within H281DRAFT_04733at 142.464 kb on - strand, within H281DRAFT_04733at 142.561 kb on - strandat 142.561 kb on - strandat 142.650 kb on + strandat 142.650 kb on + strandat 142.651 kb on - strandat 142.651 kb on - strandat 142.651 kb on - strandat 142.722 kb on - strandat 142.728 kb on + strandat 142.728 kb on + strandat 142.729 kb on - strandat 142.735 kb on + strandat 142.735 kb on + strandat 142.735 kb on + strandat 142.735 kb on + strandat 142.735 kb on + strandat 142.877 kb on + strand, within H281DRAFT_04734at 142.877 kb on + strand, within H281DRAFT_04734at 142.878 kb on - strand, within H281DRAFT_04734at 143.070 kb on + strandat 143.070 kb on + strandat 143.074 kb on + strandat 143.074 kb on + strandat 143.075 kb on - strandat 143.165 kb on - strandat 143.219 kb on + strandat 143.219 kb on + strandat 143.248 kb on - strandat 143.248 kb on - strandat 143.248 kb on - strandat 143.248 kb on - strandat 143.328 kb on + strand, within H281DRAFT_04735at 143.329 kb on - strand, within H281DRAFT_04735at 143.710 kb on - strandat 143.710 kb on - strandat 143.749 kb on + strandat 143.776 kb on + strandat 143.776 kb on + strandat 143.781 kb on + strandat 143.781 kb on + strandat 143.782 kb on - strandat 143.807 kb on + strandat 143.808 kb on - strandat 143.822 kb on - strandat 143.828 kb on + strandat 143.828 kb on + strandat 143.828 kb on + strandat 143.829 kb on - strandat 143.829 kb on - strandat 143.874 kb on + strandat 143.878 kb on + strandat 143.878 kb on + strandat 143.878 kb on + strandat 143.879 kb on - strandat 143.879 kb on - strandat 143.898 kb on + strandat 143.941 kb on + strandat 144.014 kb on - strand, within H281DRAFT_04736at 144.213 kb on - strand, within H281DRAFT_04736at 144.302 kb on - strand, within H281DRAFT_04736at 144.302 kb on - strand, within H281DRAFT_04736at 144.302 kb on - strand, within H281DRAFT_04736at 144.305 kb on + strand, within H281DRAFT_04736at 144.349 kb on - strand, within H281DRAFT_04736at 144.349 kb on - strand, within H281DRAFT_04736at 144.480 kb on - strandat 144.497 kb on + strandat 144.497 kb on + strandat 144.498 kb on - strandat 144.527 kb on + strandat 144.527 kb on + strandat 144.527 kb on + strandat 144.528 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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142,315 + H281DRAFT_04733 0.51 -0.3
142,464 - H281DRAFT_04733 0.82 -0.7
142,561 - +0.2
142,561 - +0.5
142,650 + -1.4
142,650 + -1.0
142,651 - -0.3
142,651 - -0.7
142,651 - +0.6
142,722 - +0.1
142,728 + -0.0
142,728 + -0.8
142,729 - -0.4
142,735 + -1.4
142,735 + -2.4
142,735 + +1.4
142,735 + -0.3
142,735 + -1.5
142,877 + H281DRAFT_04734 0.41 -0.5
142,877 + H281DRAFT_04734 0.41 -1.0
142,878 - H281DRAFT_04734 0.41 -1.0
143,070 + +0.6
143,070 + -0.6
143,074 + -1.4
143,074 + +0.8
143,075 - -0.9
143,165 - +1.2
143,219 + +0.6
143,219 + -2.1
143,248 - -1.4
143,248 - -0.6
143,248 - -1.5
143,248 - -0.9
143,328 + H281DRAFT_04735 0.27 -0.8
143,329 - H281DRAFT_04735 0.27 -1.8
143,710 - +0.3
143,710 - +0.3
143,749 + +0.2
143,776 + -1.1
143,776 + -0.4
143,781 + +0.1
143,781 + -0.7
143,782 - +0.5
143,807 + -0.5
143,808 - -0.5
143,822 - +1.1
143,828 + +2.6
143,828 + -1.6
143,828 + -0.1
143,829 - +0.3
143,829 - -1.0
143,874 + -0.5
143,878 + -1.1
143,878 + -0.9
143,878 + -0.2
143,879 - +0.2
143,879 - -0.3
143,898 + -0.4
143,941 + +0.5
144,014 - H281DRAFT_04736 0.19 -0.3
144,213 - H281DRAFT_04736 0.50 -0.2
144,302 - H281DRAFT_04736 0.64 +1.1
144,302 - H281DRAFT_04736 0.64 +0.0
144,302 - H281DRAFT_04736 0.64 -0.6
144,305 + H281DRAFT_04736 0.65 +1.2
144,349 - H281DRAFT_04736 0.72 +0.0
144,349 - H281DRAFT_04736 0.72 +0.7
144,480 - +0.3
144,497 + +0.4
144,497 + -0.9
144,498 - +0.5
144,527 + +1.1
144,527 + +0.1
144,527 + +0.2
144,528 - +1.2

Or see this region's nucleotide sequence