Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04149

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04148 and H281DRAFT_04149 overlap by 14 nucleotidesH281DRAFT_04149 and H281DRAFT_04150 are separated by 64 nucleotides H281DRAFT_04148: H281DRAFT_04148 - monosaccharide ABC transporter membrane protein, CUT2 family, at 258,389 to 259,396 _04148 H281DRAFT_04149: H281DRAFT_04149 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 259,383 to 260,903 _04149 H281DRAFT_04150: H281DRAFT_04150 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 260,968 to 261,921 _04150 Position (kb) 259 260 261Strain fitness (log2 ratio) -1 0 1at 258.390 kb on + strandat 258.397 kb on + strandat 258.415 kb on - strandat 258.688 kb on - strand, within H281DRAFT_04148at 258.726 kb on - strand, within H281DRAFT_04148at 259.426 kb on + strandat 259.427 kb on - strandat 260.283 kb on + strand, within H281DRAFT_04149at 260.871 kb on - strandat 261.347 kb on - strand, within H281DRAFT_04150at 261.461 kb on - strand, within H281DRAFT_04150at 261.464 kb on + strand, within H281DRAFT_04150at 261.465 kb on - strand, within H281DRAFT_04150at 261.886 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
remove
258,390 + +1.1
258,397 + +0.2
258,415 - -0.9
258,688 - H281DRAFT_04148 0.30 +0.2
258,726 - H281DRAFT_04148 0.33 -1.2
259,426 + -0.7
259,427 - -1.0
260,283 + H281DRAFT_04149 0.59 -0.9
260,871 - +0.1
261,347 - H281DRAFT_04150 0.40 +0.3
261,461 - H281DRAFT_04150 0.52 +0.4
261,464 + H281DRAFT_04150 0.52 +0.8
261,465 - H281DRAFT_04150 0.52 -0.3
261,886 - +0.9

Or see this region's nucleotide sequence