Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03563

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03562 and H281DRAFT_03563 are separated by 5 nucleotidesH281DRAFT_03563 and H281DRAFT_03564 are separated by 69 nucleotidesH281DRAFT_03564 and H281DRAFT_03565 are separated by 30 nucleotides H281DRAFT_03562: H281DRAFT_03562 - AraC family transcriptional regulator, at 68,019 to 68,936 _03562 H281DRAFT_03563: H281DRAFT_03563 - FAD/FMN-containing dehydrogenase, at 68,942 to 71,962 _03563 H281DRAFT_03564: H281DRAFT_03564 - 2-keto-4-pentenoate hydratase, at 72,032 to 72,790 _03564 H281DRAFT_03565: H281DRAFT_03565 - Sugar phosphate permease, at 72,821 to 74,107 _03565 Position (kb) 68 69 70 71 72Strain fitness (log2 ratio) -1 0 1 2at 67.955 kb on + strandat 67.955 kb on + strandat 67.956 kb on - strandat 67.982 kb on - strandat 67.985 kb on + strandat 67.985 kb on + strandat 67.985 kb on + strandat 67.985 kb on + strandat 67.986 kb on - strandat 67.986 kb on - strandat 67.994 kb on - strandat 68.227 kb on - strand, within H281DRAFT_03562at 68.303 kb on - strand, within H281DRAFT_03562at 68.343 kb on - strand, within H281DRAFT_03562at 68.362 kb on - strand, within H281DRAFT_03562at 68.445 kb on + strand, within H281DRAFT_03562at 68.445 kb on + strand, within H281DRAFT_03562at 68.842 kb on + strand, within H281DRAFT_03562at 68.843 kb on - strand, within H281DRAFT_03562at 68.870 kb on + strandat 68.935 kb on - strandat 68.935 kb on - strandat 69.077 kb on + strandat 69.078 kb on - strandat 69.078 kb on - strandat 69.111 kb on + strandat 69.218 kb on - strandat 69.384 kb on + strand, within H281DRAFT_03563at 69.662 kb on + strand, within H281DRAFT_03563at 69.662 kb on + strand, within H281DRAFT_03563at 69.663 kb on - strand, within H281DRAFT_03563at 70.011 kb on - strand, within H281DRAFT_03563at 70.040 kb on + strand, within H281DRAFT_03563at 70.040 kb on + strand, within H281DRAFT_03563at 70.041 kb on - strand, within H281DRAFT_03563at 70.165 kb on + strand, within H281DRAFT_03563at 70.165 kb on + strand, within H281DRAFT_03563at 70.166 kb on - strand, within H281DRAFT_03563at 70.492 kb on - strand, within H281DRAFT_03563at 70.503 kb on + strand, within H281DRAFT_03563at 70.503 kb on + strand, within H281DRAFT_03563at 70.515 kb on - strand, within H281DRAFT_03563at 70.618 kb on - strand, within H281DRAFT_03563at 70.672 kb on - strand, within H281DRAFT_03563at 71.443 kb on - strandat 71.869 kb on + strandat 71.869 kb on + strandat 71.870 kb on - strandat 71.963 kb on - strandat 72.036 kb on + strandat 72.118 kb on - strand, within H281DRAFT_03564at 72.300 kb on + strand, within H281DRAFT_03564at 72.454 kb on + strand, within H281DRAFT_03564at 72.454 kb on + strand, within H281DRAFT_03564at 72.455 kb on - strand, within H281DRAFT_03564at 72.456 kb on + strand, within H281DRAFT_03564at 72.456 kb on + strand, within H281DRAFT_03564at 72.456 kb on + strand, within H281DRAFT_03564at 72.457 kb on - strand, within H281DRAFT_03564at 72.812 kb on - strandat 72.812 kb on - strandat 72.823 kb on - strandat 72.823 kb on - strandat 72.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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67,955 + +0.4
67,955 + +1.4
67,956 - +0.2
67,982 - +0.1
67,985 + -0.7
67,985 + -0.4
67,985 + +0.1
67,985 + -0.5
67,986 - -1.5
67,986 - +0.6
67,994 - -0.1
68,227 - H281DRAFT_03562 0.23 +0.8
68,303 - H281DRAFT_03562 0.31 -0.4
68,343 - H281DRAFT_03562 0.35 +0.1
68,362 - H281DRAFT_03562 0.37 -0.9
68,445 + H281DRAFT_03562 0.46 -1.0
68,445 + H281DRAFT_03562 0.46 -0.1
68,842 + H281DRAFT_03562 0.90 +0.3
68,843 - H281DRAFT_03562 0.90 -0.8
68,870 + +0.3
68,935 - -0.2
68,935 - +0.0
69,077 + -0.5
69,078 - +0.6
69,078 - +1.6
69,111 + +2.0
69,218 - -0.6
69,384 + H281DRAFT_03563 0.15 -0.5
69,662 + H281DRAFT_03563 0.24 -0.5
69,662 + H281DRAFT_03563 0.24 +0.7
69,663 - H281DRAFT_03563 0.24 -1.1
70,011 - H281DRAFT_03563 0.35 +0.5
70,040 + H281DRAFT_03563 0.36 +1.1
70,040 + H281DRAFT_03563 0.36 +0.2
70,041 - H281DRAFT_03563 0.36 +1.0
70,165 + H281DRAFT_03563 0.40 +0.1
70,165 + H281DRAFT_03563 0.40 +1.6
70,166 - H281DRAFT_03563 0.41 -0.0
70,492 - H281DRAFT_03563 0.51 -1.0
70,503 + H281DRAFT_03563 0.52 +0.0
70,503 + H281DRAFT_03563 0.52 -0.6
70,515 - H281DRAFT_03563 0.52 +0.6
70,618 - H281DRAFT_03563 0.55 +0.2
70,672 - H281DRAFT_03563 0.57 +1.0
71,443 - +0.1
71,869 + +0.2
71,869 + -0.0
71,870 - +0.5
71,963 - -0.6
72,036 + -1.2
72,118 - H281DRAFT_03564 0.11 -0.9
72,300 + H281DRAFT_03564 0.35 -0.7
72,454 + H281DRAFT_03564 0.56 -1.5
72,454 + H281DRAFT_03564 0.56 +2.3
72,455 - H281DRAFT_03564 0.56 +0.3
72,456 + H281DRAFT_03564 0.56 +0.5
72,456 + H281DRAFT_03564 0.56 -0.5
72,456 + H281DRAFT_03564 0.56 +0.5
72,457 - H281DRAFT_03564 0.56 -0.2
72,812 - -1.1
72,812 - -0.0
72,823 - -0.9
72,823 - -0.3
72,932 - -0.6

Or see this region's nucleotide sequence