Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03196

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03194 and H281DRAFT_03195 overlap by 8 nucleotidesH281DRAFT_03195 and H281DRAFT_03196 are separated by 199 nucleotidesH281DRAFT_03196 and H281DRAFT_03197 are separated by 11 nucleotides H281DRAFT_03194: H281DRAFT_03194 - D-methionine transport system ATP-binding protein, at 242,897 to 244,057 _03194 H281DRAFT_03195: H281DRAFT_03195 - D-methionine transport system permease protein, at 244,050 to 244,706 _03195 H281DRAFT_03196: H281DRAFT_03196 - Acyl-CoA dehydrogenase, at 244,906 to 246,108 _03196 H281DRAFT_03197: H281DRAFT_03197 - manganese transport protein, at 246,120 to 247,499 _03197 Position (kb) 244 245 246 247Strain fitness (log2 ratio) -1 0 1 2at 244.041 kb on + strandat 244.042 kb on - strandat 244.315 kb on + strand, within H281DRAFT_03195at 244.316 kb on - strand, within H281DRAFT_03195at 244.408 kb on + strand, within H281DRAFT_03195at 244.409 kb on - strand, within H281DRAFT_03195at 244.446 kb on - strand, within H281DRAFT_03195at 244.652 kb on + strandat 244.721 kb on + strandat 244.811 kb on - strandat 244.903 kb on - strandat 244.903 kb on - strandat 245.230 kb on - strand, within H281DRAFT_03196at 245.262 kb on + strand, within H281DRAFT_03196at 245.583 kb on + strand, within H281DRAFT_03196at 245.744 kb on - strand, within H281DRAFT_03196at 245.773 kb on - strand, within H281DRAFT_03196at 246.101 kb on - strandat 246.101 kb on - strandat 246.309 kb on + strand, within H281DRAFT_03197at 246.311 kb on + strand, within H281DRAFT_03197at 246.311 kb on + strand, within H281DRAFT_03197at 246.312 kb on - strand, within H281DRAFT_03197at 246.364 kb on - strand, within H281DRAFT_03197at 246.364 kb on - strand, within H281DRAFT_03197at 246.600 kb on - strand, within H281DRAFT_03197at 246.813 kb on + strand, within H281DRAFT_03197at 246.814 kb on - strand, within H281DRAFT_03197at 246.862 kb on - strand, within H281DRAFT_03197at 247.060 kb on - strand, within H281DRAFT_03197

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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244,041 + +1.0
244,042 - +0.4
244,315 + H281DRAFT_03195 0.40 +0.1
244,316 - H281DRAFT_03195 0.40 -0.1
244,408 + H281DRAFT_03195 0.54 -0.0
244,409 - H281DRAFT_03195 0.55 -0.0
244,446 - H281DRAFT_03195 0.60 -0.0
244,652 + +2.1
244,721 + +0.1
244,811 - -0.4
244,903 - -0.9
244,903 - -0.0
245,230 - H281DRAFT_03196 0.27 +1.0
245,262 + H281DRAFT_03196 0.30 +0.4
245,583 + H281DRAFT_03196 0.56 +0.3
245,744 - H281DRAFT_03196 0.70 +0.9
245,773 - H281DRAFT_03196 0.72 +1.0
246,101 - +0.3
246,101 - -0.3
246,309 + H281DRAFT_03197 0.14 +0.2
246,311 + H281DRAFT_03197 0.14 -0.7
246,311 + H281DRAFT_03197 0.14 +1.3
246,312 - H281DRAFT_03197 0.14 +0.6
246,364 - H281DRAFT_03197 0.18 +0.3
246,364 - H281DRAFT_03197 0.18 +0.3
246,600 - H281DRAFT_03197 0.35 +0.3
246,813 + H281DRAFT_03197 0.50 -0.6
246,814 - H281DRAFT_03197 0.50 +1.3
246,862 - H281DRAFT_03197 0.54 -0.8
247,060 - H281DRAFT_03197 0.68 +0.3

Or see this region's nucleotide sequence