Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02434

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02433 and H281DRAFT_02434 are separated by 45 nucleotidesH281DRAFT_02434 and H281DRAFT_02435 are separated by 363 nucleotidesH281DRAFT_02435 and H281DRAFT_02436 are separated by 18 nucleotides H281DRAFT_02433: H281DRAFT_02433 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 604,652 to 605,797 _02433 H281DRAFT_02434: H281DRAFT_02434 - Predicted O-linked N-acetylglucosamine transferase, SPINDLY family, at 605,843 to 608,317 _02434 H281DRAFT_02435: H281DRAFT_02435 - protein FliT, at 608,681 to 608,980 _02435 H281DRAFT_02436: H281DRAFT_02436 - flagellar hook-associated protein 2, at 608,999 to 610,525 _02436 Position (kb) 605 606 607 608 609Strain fitness (log2 ratio) -2 -1 0 1at 604.887 kb on + strand, within H281DRAFT_02433at 604.888 kb on - strand, within H281DRAFT_02433at 604.915 kb on - strand, within H281DRAFT_02433at 604.933 kb on + strand, within H281DRAFT_02433at 604.989 kb on + strand, within H281DRAFT_02433at 604.990 kb on - strand, within H281DRAFT_02433at 605.032 kb on + strand, within H281DRAFT_02433at 605.032 kb on + strand, within H281DRAFT_02433at 605.032 kb on + strand, within H281DRAFT_02433at 605.298 kb on + strand, within H281DRAFT_02433at 605.316 kb on + strand, within H281DRAFT_02433at 605.317 kb on - strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.364 kb on + strand, within H281DRAFT_02433at 605.365 kb on - strand, within H281DRAFT_02433at 605.365 kb on - strand, within H281DRAFT_02433at 605.365 kb on - strand, within H281DRAFT_02433at 605.616 kb on + strand, within H281DRAFT_02433at 605.617 kb on - strand, within H281DRAFT_02433at 605.742 kb on + strandat 605.742 kb on + strandat 605.743 kb on - strandat 605.797 kb on + strandat 605.798 kb on - strandat 605.894 kb on - strandat 605.894 kb on - strandat 606.316 kb on + strand, within H281DRAFT_02434at 606.316 kb on + strand, within H281DRAFT_02434at 606.317 kb on - strand, within H281DRAFT_02434at 606.352 kb on + strand, within H281DRAFT_02434at 606.353 kb on - strand, within H281DRAFT_02434at 606.354 kb on + strand, within H281DRAFT_02434at 606.429 kb on + strand, within H281DRAFT_02434at 606.429 kb on + strand, within H281DRAFT_02434at 606.430 kb on - strand, within H281DRAFT_02434at 606.430 kb on - strand, within H281DRAFT_02434at 606.559 kb on - strand, within H281DRAFT_02434at 606.568 kb on - strand, within H281DRAFT_02434at 606.568 kb on - strand, within H281DRAFT_02434at 606.622 kb on + strand, within H281DRAFT_02434at 606.622 kb on + strand, within H281DRAFT_02434at 606.622 kb on + strand, within H281DRAFT_02434at 606.622 kb on + strand, within H281DRAFT_02434at 606.623 kb on - strand, within H281DRAFT_02434at 606.624 kb on + strand, within H281DRAFT_02434at 606.624 kb on + strand, within H281DRAFT_02434at 606.624 kb on + strand, within H281DRAFT_02434at 606.625 kb on - strand, within H281DRAFT_02434at 606.625 kb on - strand, within H281DRAFT_02434at 606.625 kb on - strand, within H281DRAFT_02434at 606.711 kb on + strand, within H281DRAFT_02434at 606.712 kb on - strand, within H281DRAFT_02434at 606.712 kb on - strand, within H281DRAFT_02434at 606.712 kb on - strand, within H281DRAFT_02434at 606.712 kb on - strand, within H281DRAFT_02434at 606.715 kb on - strand, within H281DRAFT_02434at 606.715 kb on - strand, within H281DRAFT_02434at 606.805 kb on + strandat 606.805 kb on + strand, within H281DRAFT_02434at 606.960 kb on + strand, within H281DRAFT_02434at 606.963 kb on + strand, within H281DRAFT_02434at 606.963 kb on + strand, within H281DRAFT_02434at 606.964 kb on - strand, within H281DRAFT_02434at 607.020 kb on + strand, within H281DRAFT_02434at 607.020 kb on + strand, within H281DRAFT_02434at 607.023 kb on + strand, within H281DRAFT_02434at 607.023 kb on + strand, within H281DRAFT_02434at 607.023 kb on + strand, within H281DRAFT_02434at 607.101 kb on + strand, within H281DRAFT_02434at 607.161 kb on + strand, within H281DRAFT_02434at 607.299 kb on + strandat 607.318 kb on + strand, within H281DRAFT_02434at 607.318 kb on + strand, within H281DRAFT_02434at 607.319 kb on - strand, within H281DRAFT_02434at 607.319 kb on - strand, within H281DRAFT_02434at 607.319 kb on - strand, within H281DRAFT_02434at 607.417 kb on + strand, within H281DRAFT_02434at 607.417 kb on + strand, within H281DRAFT_02434at 607.418 kb on - strand, within H281DRAFT_02434at 607.418 kb on - strand, within H281DRAFT_02434at 607.720 kb on + strand, within H281DRAFT_02434at 607.977 kb on - strand, within H281DRAFT_02434at 608.028 kb on + strandat 608.029 kb on - strand, within H281DRAFT_02434at 608.041 kb on - strand, within H281DRAFT_02434at 608.136 kb on + strandat 608.339 kb on + strandat 608.340 kb on - strandat 608.340 kb on - strandat 608.340 kb on - strandat 608.416 kb on - strandat 608.596 kb on + strandat 608.597 kb on - strandat 608.597 kb on - strandat 608.597 kb on - strandat 608.597 kb on - strandat 608.597 kb on - strandat 609.001 kb on - strandat 609.001 kb on - strandat 609.001 kb on - strandat 609.057 kb on + strandat 609.118 kb on - strandat 609.118 kb on - strandat 609.142 kb on - strandat 609.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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604,887 + H281DRAFT_02433 0.21 -2.0
604,888 - H281DRAFT_02433 0.21 +1.6
604,915 - H281DRAFT_02433 0.23 -0.6
604,933 + H281DRAFT_02433 0.25 -1.2
604,989 + H281DRAFT_02433 0.29 -0.3
604,990 - H281DRAFT_02433 0.29 +0.8
605,032 + H281DRAFT_02433 0.33 -0.4
605,032 + H281DRAFT_02433 0.33 -1.0
605,032 + H281DRAFT_02433 0.33 -1.2
605,298 + H281DRAFT_02433 0.56 +1.0
605,316 + H281DRAFT_02433 0.58 +0.5
605,317 - H281DRAFT_02433 0.58 -1.0
605,364 + H281DRAFT_02433 0.62 -0.5
605,364 + H281DRAFT_02433 0.62 -0.0
605,364 + H281DRAFT_02433 0.62 -0.7
605,364 + H281DRAFT_02433 0.62 -0.7
605,365 - H281DRAFT_02433 0.62 +0.1
605,365 - H281DRAFT_02433 0.62 +0.2
605,365 - H281DRAFT_02433 0.62 -0.9
605,616 + H281DRAFT_02433 0.84 +0.8
605,617 - H281DRAFT_02433 0.84 -0.5
605,742 + -1.1
605,742 + -2.7
605,743 - -2.0
605,797 + +0.0
605,798 - +0.3
605,894 - -0.5
605,894 - -0.6
606,316 + H281DRAFT_02434 0.19 +0.5
606,316 + H281DRAFT_02434 0.19 +0.4
606,317 - H281DRAFT_02434 0.19 +0.2
606,352 + H281DRAFT_02434 0.21 -0.1
606,353 - H281DRAFT_02434 0.21 +0.2
606,354 + H281DRAFT_02434 0.21 +0.5
606,429 + H281DRAFT_02434 0.24 -0.1
606,429 + H281DRAFT_02434 0.24 +0.1
606,430 - H281DRAFT_02434 0.24 -1.1
606,430 - H281DRAFT_02434 0.24 -0.2
606,559 - H281DRAFT_02434 0.29 +0.0
606,568 - H281DRAFT_02434 0.29 +0.0
606,568 - H281DRAFT_02434 0.29 -0.1
606,622 + H281DRAFT_02434 0.31 -1.3
606,622 + H281DRAFT_02434 0.31 -0.1
606,622 + H281DRAFT_02434 0.31 -2.0
606,622 + H281DRAFT_02434 0.31 +0.6
606,623 - H281DRAFT_02434 0.32 -0.8
606,624 + H281DRAFT_02434 0.32 +0.2
606,624 + H281DRAFT_02434 0.32 -0.3
606,624 + H281DRAFT_02434 0.32 -0.7
606,625 - H281DRAFT_02434 0.32 -0.8
606,625 - H281DRAFT_02434 0.32 -0.4
606,625 - H281DRAFT_02434 0.32 +0.4
606,711 + H281DRAFT_02434 0.35 -0.4
606,712 - H281DRAFT_02434 0.35 -0.9
606,712 - H281DRAFT_02434 0.35 -0.1
606,712 - H281DRAFT_02434 0.35 -1.1
606,712 - H281DRAFT_02434 0.35 +0.4
606,715 - H281DRAFT_02434 0.35 +0.8
606,715 - H281DRAFT_02434 0.35 -0.2
606,805 + +1.2
606,805 + H281DRAFT_02434 0.39 -1.9
606,960 + H281DRAFT_02434 0.45 +0.7
606,963 + H281DRAFT_02434 0.45 -1.2
606,963 + H281DRAFT_02434 0.45 -0.5
606,964 - H281DRAFT_02434 0.45 +0.1
607,020 + H281DRAFT_02434 0.48 +1.1
607,020 + H281DRAFT_02434 0.48 -0.8
607,023 + H281DRAFT_02434 0.48 +0.1
607,023 + H281DRAFT_02434 0.48 +0.1
607,023 + H281DRAFT_02434 0.48 +0.2
607,101 + H281DRAFT_02434 0.51 -0.2
607,161 + H281DRAFT_02434 0.53 -0.8
607,299 + +1.2
607,318 + H281DRAFT_02434 0.60 -1.6
607,318 + H281DRAFT_02434 0.60 +0.9
607,319 - H281DRAFT_02434 0.60 -0.1
607,319 - H281DRAFT_02434 0.60 -0.8
607,319 - H281DRAFT_02434 0.60 +0.2
607,417 + H281DRAFT_02434 0.64 +0.5
607,417 + H281DRAFT_02434 0.64 -0.4
607,418 - H281DRAFT_02434 0.64 -0.1
607,418 - H281DRAFT_02434 0.64 +0.1
607,720 + H281DRAFT_02434 0.76 +0.2
607,977 - H281DRAFT_02434 0.86 -1.6
608,028 + +0.2
608,029 - H281DRAFT_02434 0.88 -0.3
608,041 - H281DRAFT_02434 0.89 -1.9
608,136 + +0.0
608,339 + -0.0
608,340 - -0.8
608,340 - +0.3
608,340 - +0.7
608,416 - -2.1
608,596 + +0.1
608,597 - -0.9
608,597 - +0.6
608,597 - +0.7
608,597 - +0.1
608,597 - -0.4
609,001 - +0.5
609,001 - +0.2
609,001 - +0.3
609,057 + -0.7
609,118 - -0.4
609,118 - -0.6
609,142 - -0.1
609,142 - +0.1

Or see this region's nucleotide sequence