Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01351

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01349 and H281DRAFT_01350 are separated by 171 nucleotidesH281DRAFT_01350 and H281DRAFT_01351 are separated by 351 nucleotidesH281DRAFT_01351 and H281DRAFT_01352 are separated by 200 nucleotides H281DRAFT_01349: H281DRAFT_01349 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, at 191,903 to 193,021 _01349 H281DRAFT_01350: H281DRAFT_01350 - DNA-binding protein HU-beta, at 193,193 to 193,471 _01350 H281DRAFT_01351: H281DRAFT_01351 - hypothetical protein, at 193,823 to 194,206 _01351 H281DRAFT_01352: H281DRAFT_01352 - diguanylate cyclase/phosphodiesterase, at 194,407 to 196,380 _01352 Position (kb) 193 194 195Strain fitness (log2 ratio) -1 0 1at 192.951 kb on + strandat 193.488 kb on + strandat 193.489 kb on - strandat 193.506 kb on + strandat 193.541 kb on + strandat 193.542 kb on - strandat 193.579 kb on + strandat 193.579 kb on + strandat 193.580 kb on - strandat 193.642 kb on + strandat 193.642 kb on + strandat 193.642 kb on + strandat 193.643 kb on - strandat 193.839 kb on + strandat 193.839 kb on + strandat 193.839 kb on + strandat 193.839 kb on + strandat 193.840 kb on - strandat 193.840 kb on - strandat 194.116 kb on - strand, within H281DRAFT_01351at 194.134 kb on + strand, within H281DRAFT_01351at 194.184 kb on + strandat 194.184 kb on + strandat 194.260 kb on - strandat 194.276 kb on + strandat 194.355 kb on + strandat 194.355 kb on + strandat 194.356 kb on - strandat 194.367 kb on + strandat 194.513 kb on - strandat 194.630 kb on + strand, within H281DRAFT_01352at 194.794 kb on + strand, within H281DRAFT_01352

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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192,951 + +0.6
193,488 + +0.7
193,489 - +0.0
193,506 + -0.8
193,541 + -0.5
193,542 - +0.5
193,579 + +0.3
193,579 + +1.3
193,580 - -0.2
193,642 + +0.1
193,642 + -0.7
193,642 + -1.5
193,643 - -0.8
193,839 + +0.6
193,839 + +0.2
193,839 + -0.5
193,839 + +0.5
193,840 - +0.0
193,840 - +0.1
194,116 - H281DRAFT_01351 0.76 +1.3
194,134 + H281DRAFT_01351 0.81 -0.1
194,184 + -0.2
194,184 + +0.3
194,260 - +0.3
194,276 + -0.5
194,355 + +0.6
194,355 + +0.2
194,356 - +0.4
194,367 + -0.6
194,513 - +0.1
194,630 + H281DRAFT_01352 0.11 -0.1
194,794 + H281DRAFT_01352 0.20 -0.2

Or see this region's nucleotide sequence