Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01237

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01235 and H281DRAFT_01236 are separated by 28 nucleotidesH281DRAFT_01236 and H281DRAFT_01237 are separated by 148 nucleotidesH281DRAFT_01237 and H281DRAFT_01238 are separated by 457 nucleotides H281DRAFT_01235: H281DRAFT_01235 - DNA-binding protein H-NS, at 72,981 to 73,307 _01235 H281DRAFT_01236: H281DRAFT_01236 - Protein-tyrosine-phosphatase, at 73,336 to 73,845 _01236 H281DRAFT_01237: H281DRAFT_01237 - DnaJ-class molecular chaperone with C-terminal Zn finger domain, at 73,994 to 74,674 _01237 H281DRAFT_01238: H281DRAFT_01238 - FMN reductase, at 75,132 to 75,791 _01238 Position (kb) 73 74 75Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 73.002 kb on - strandat 73.002 kb on - strandat 73.072 kb on + strand, within H281DRAFT_01235at 73.072 kb on + strand, within H281DRAFT_01235at 73.072 kb on + strandat 73.073 kb on - strand, within H281DRAFT_01235at 73.073 kb on - strand, within H281DRAFT_01235at 73.330 kb on + strandat 73.330 kb on + strandat 73.330 kb on + strandat 73.331 kb on - strandat 73.332 kb on + strandat 73.332 kb on + strandat 73.332 kb on + strandat 73.332 kb on + strandat 73.333 kb on - strandat 73.435 kb on + strand, within H281DRAFT_01236at 73.436 kb on - strand, within H281DRAFT_01236at 73.436 kb on - strand, within H281DRAFT_01236at 73.498 kb on - strand, within H281DRAFT_01236at 73.654 kb on + strand, within H281DRAFT_01236at 73.655 kb on - strand, within H281DRAFT_01236at 73.655 kb on - strand, within H281DRAFT_01236at 73.876 kb on + strandat 73.876 kb on + strandat 73.877 kb on - strandat 73.877 kb on - strandat 73.918 kb on + strandat 73.919 kb on - strandat 73.919 kb on - strandat 73.919 kb on - strandat 73.919 kb on - strandat 73.991 kb on + strandat 73.992 kb on - strandat 73.992 kb on - strandat 74.131 kb on + strand, within H281DRAFT_01237at 74.198 kb on - strand, within H281DRAFT_01237at 74.661 kb on + strandat 74.858 kb on - strandat 74.902 kb on + strandat 74.993 kb on + strandat 74.994 kb on - strandat 75.001 kb on + strandat 75.040 kb on + strandat 75.040 kb on + strandat 75.041 kb on - strandat 75.287 kb on + strand, within H281DRAFT_01238at 75.449 kb on - strand, within H281DRAFT_01238at 75.468 kb on + strand, within H281DRAFT_01238at 75.469 kb on - strand, within H281DRAFT_01238at 75.508 kb on - strand, within H281DRAFT_01238

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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73,002 - -1.5
73,002 - +0.5
73,072 + H281DRAFT_01235 0.28 +0.5
73,072 + H281DRAFT_01235 0.28 +0.9
73,072 + +0.8
73,073 - H281DRAFT_01235 0.28 -0.7
73,073 - H281DRAFT_01235 0.28 -4.2
73,330 + +0.5
73,330 + -0.3
73,330 + -1.2
73,331 - +0.6
73,332 + +0.1
73,332 + +0.1
73,332 + +0.4
73,332 + +2.4
73,333 - -2.2
73,435 + H281DRAFT_01236 0.19 +0.5
73,436 - H281DRAFT_01236 0.20 +0.6
73,436 - H281DRAFT_01236 0.20 -0.9
73,498 - H281DRAFT_01236 0.32 -0.1
73,654 + H281DRAFT_01236 0.62 -0.4
73,655 - H281DRAFT_01236 0.63 -0.9
73,655 - H281DRAFT_01236 0.63 +0.0
73,876 + +0.5
73,876 + -0.7
73,877 - +0.1
73,877 - -0.6
73,918 + -0.4
73,919 - +0.5
73,919 - -0.5
73,919 - -0.3
73,919 - +0.1
73,991 + -0.1
73,992 - -0.2
73,992 - +0.6
74,131 + H281DRAFT_01237 0.20 +1.3
74,198 - H281DRAFT_01237 0.30 +0.2
74,661 + +1.4
74,858 - +0.7
74,902 + -0.8
74,993 + -0.7
74,994 - -0.7
75,001 + +0.6
75,040 + -0.3
75,040 + -1.3
75,041 - +0.6
75,287 + H281DRAFT_01238 0.23 +0.6
75,449 - H281DRAFT_01238 0.48 +0.2
75,468 + H281DRAFT_01238 0.51 -2.0
75,469 - H281DRAFT_01238 0.51 -1.8
75,508 - H281DRAFT_01238 0.57 -0.7

Or see this region's nucleotide sequence