Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01141

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01139 and H281DRAFT_01140 overlap by 4 nucleotidesH281DRAFT_01140 and H281DRAFT_01141 overlap by 4 nucleotidesH281DRAFT_01141 and H281DRAFT_01142 overlap by 4 nucleotidesH281DRAFT_01142 and H281DRAFT_01143 overlap by 8 nucleotides H281DRAFT_01139: H281DRAFT_01139 - 2-furoyl-CoA dehydrogenase 2Fe-2S iron sulfur subunit, at 1,286,208 to 1,286,777 _01139 H281DRAFT_01140: H281DRAFT_01140 - 2-furoyl-CoA dehydrogenase FAD binding subunit, at 1,286,774 to 1,287,595 _01140 H281DRAFT_01141: H281DRAFT_01141 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 1,287,592 to 1,290,654 _01141 H281DRAFT_01142: H281DRAFT_01142 - 2,5-furandicarboxylate decarboxylase 2, at 1,290,651 to 1,291,307 _01142 H281DRAFT_01143: H281DRAFT_01143 - 2,5-furandicarboxylate decarboxylase 1, at 1,291,300 to 1,292,784 _01143 Position (kb) 1287 1288 1289 1290 1291Strain fitness (log2 ratio) -1 0 1at 1287.986 kb on + strand, within H281DRAFT_01141at 1289.056 kb on + strand, within H281DRAFT_01141at 1289.610 kb on - strand, within H281DRAFT_01141at 1290.031 kb on - strand, within H281DRAFT_01141at 1291.069 kb on + strand, within H281DRAFT_01142at 1291.088 kb on + strand, within H281DRAFT_01142at 1291.323 kb on - strandat 1291.472 kb on + strand, within H281DRAFT_01143at 1291.653 kb on - strand, within H281DRAFT_01143at 1291.653 kb on - strand, within H281DRAFT_01143

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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1,287,986 + H281DRAFT_01141 0.13 -0.2
1,289,056 + H281DRAFT_01141 0.48 +1.6
1,289,610 - H281DRAFT_01141 0.66 +0.8
1,290,031 - H281DRAFT_01141 0.80 +0.8
1,291,069 + H281DRAFT_01142 0.64 +0.1
1,291,088 + H281DRAFT_01142 0.67 -1.2
1,291,323 - -0.7
1,291,472 + H281DRAFT_01143 0.12 +0.6
1,291,653 - H281DRAFT_01143 0.24 +1.0
1,291,653 - H281DRAFT_01143 0.24 -0.3

Or see this region's nucleotide sequence