Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01110

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01108 and H281DRAFT_01109 are separated by 161 nucleotidesH281DRAFT_01109 and H281DRAFT_01110 are separated by 34 nucleotidesH281DRAFT_01110 and H281DRAFT_01111 are separated by 285 nucleotides H281DRAFT_01108: H281DRAFT_01108 - Glycosyltransferase involved in cell wall bisynthesis, at 1,248,362 to 1,249,417 _01108 H281DRAFT_01109: H281DRAFT_01109 - hypothetical protein, at 1,249,579 to 1,249,845 _01109 H281DRAFT_01110: H281DRAFT_01110 - Protein of unknown function (DUF2934), at 1,249,880 to 1,250,179 _01110 H281DRAFT_01111: H281DRAFT_01111 - transcriptional regulator, DeoR family, at 1,250,465 to 1,251,190 _01111 Position (kb) 1249 1250 1251Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1249.039 kb on - strand, within H281DRAFT_01108at 1249.172 kb on + strand, within H281DRAFT_01108at 1249.365 kb on + strandat 1249.390 kb on - strandat 1249.598 kb on + strandat 1249.833 kb on - strandat 1249.864 kb on + strandat 1250.150 kb on + strandat 1250.151 kb on - strandat 1250.151 kb on - strandat 1250.184 kb on - strandat 1250.427 kb on + strandat 1250.829 kb on - strand, within H281DRAFT_01111at 1250.898 kb on - strand, within H281DRAFT_01111

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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1,249,039 - H281DRAFT_01108 0.64 +0.5
1,249,172 + H281DRAFT_01108 0.77 -0.0
1,249,365 + -0.3
1,249,390 - +0.1
1,249,598 + +2.4
1,249,833 - +1.7
1,249,864 + -3.1
1,250,150 + -1.7
1,250,151 - -1.0
1,250,151 - -0.3
1,250,184 - -0.1
1,250,427 + +0.4
1,250,829 - H281DRAFT_01111 0.50 +1.9
1,250,898 - H281DRAFT_01111 0.60 -0.1

Or see this region's nucleotide sequence