Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00315

Experiment: 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00314 and H281DRAFT_00315 are separated by 100 nucleotidesH281DRAFT_00315 and H281DRAFT_00316 are separated by 170 nucleotides H281DRAFT_00314: H281DRAFT_00314 - ATP-binding cassette, subfamily B, MsbA, at 340,812 to 342,605 _00314 H281DRAFT_00315: H281DRAFT_00315 - Glycosyltransferase involved in cell wall bisynthesis, at 342,706 to 343,785 _00315 H281DRAFT_00316: H281DRAFT_00316 - ADP-heptose:LPS heptosyltransferase, at 343,956 to 345,275 _00316 Position (kb) 342 343 344Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 343.159 kb on + strand, within H281DRAFT_00315at 343.160 kb on - strand, within H281DRAFT_00315at 343.160 kb on - strand, within H281DRAFT_00315at 343.354 kb on - strand, within H281DRAFT_00315at 343.354 kb on - strand, within H281DRAFT_00315at 343.430 kb on - strand, within H281DRAFT_00315at 343.474 kb on - strand, within H281DRAFT_00315at 343.784 kb on - strandat 343.784 kb on - strandat 343.940 kb on - strandat 344.057 kb on + strandat 344.108 kb on - strand, within H281DRAFT_00316at 344.147 kb on + strand, within H281DRAFT_00316at 344.148 kb on - strand, within H281DRAFT_00316at 344.368 kb on + strand, within H281DRAFT_00316at 344.368 kb on + strand, within H281DRAFT_00316at 344.369 kb on - strand, within H281DRAFT_00316at 344.371 kb on - strand, within H281DRAFT_00316at 344.458 kb on - strand, within H281DRAFT_00316at 344.493 kb on - strand, within H281DRAFT_00316at 344.589 kb on + strand, within H281DRAFT_00316at 344.590 kb on - strand, within H281DRAFT_00316at 344.635 kb on + strand, within H281DRAFT_00316at 344.635 kb on + strandat 344.636 kb on - strand, within H281DRAFT_00316at 344.727 kb on + strand, within H281DRAFT_00316at 344.727 kb on + strand, within H281DRAFT_00316at 344.727 kb on + strandat 344.727 kb on + strand, within H281DRAFT_00316at 344.728 kb on - strand, within H281DRAFT_00316

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
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343,159 + H281DRAFT_00315 0.42 +0.9
343,160 - H281DRAFT_00315 0.42 +1.6
343,160 - H281DRAFT_00315 0.42 +1.2
343,354 - H281DRAFT_00315 0.60 +1.8
343,354 - H281DRAFT_00315 0.60 +0.8
343,430 - H281DRAFT_00315 0.67 +2.9
343,474 - H281DRAFT_00315 0.71 +2.3
343,784 - +0.4
343,784 - +0.1
343,940 - -2.3
344,057 + +0.4
344,108 - H281DRAFT_00316 0.12 +0.5
344,147 + H281DRAFT_00316 0.14 -0.2
344,148 - H281DRAFT_00316 0.15 +0.3
344,368 + H281DRAFT_00316 0.31 +1.2
344,368 + H281DRAFT_00316 0.31 +1.9
344,369 - H281DRAFT_00316 0.31 +1.2
344,371 - H281DRAFT_00316 0.31 +1.1
344,458 - H281DRAFT_00316 0.38 +2.4
344,493 - H281DRAFT_00316 0.41 +0.2
344,589 + H281DRAFT_00316 0.48 +0.9
344,590 - H281DRAFT_00316 0.48 +2.0
344,635 + H281DRAFT_00316 0.51 +0.5
344,635 + +4.2
344,636 - H281DRAFT_00316 0.52 +2.2
344,727 + H281DRAFT_00316 0.58 +1.3
344,727 + H281DRAFT_00316 0.58 +0.5
344,727 + +0.1
344,727 + H281DRAFT_00316 0.58 +1.2
344,728 - H281DRAFT_00316 0.58 +1.8

Or see this region's nucleotide sequence