Strain Fitness in Dechlorosoma suillum PS around Dsui_3519

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3517 and Dsui_3518 are separated by 84 nucleotidesDsui_3518 and Dsui_3519 are separated by 72 nucleotidesDsui_3519 and Dsui_3520 are separated by 166 nucleotides Dsui_3517: Dsui_3517 - putative membrane protein, at 3,781,246 to 3,782,076 _3517 Dsui_3518: Dsui_3518 - putative membrane protein, at 3,782,161 to 3,782,523 _3518 Dsui_3519: Dsui_3519 - 2-isopropylmalate synthase, bacterial type, at 3,782,596 to 3,784,137 _3519 Dsui_3520: Dsui_3520 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,784,304 to 3,787,411 _3520 Position (kb) 3782 3783 3784 3785Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3781.605 kb on + strand, within Dsui_3517at 3781.605 kb on + strand, within Dsui_3517at 3781.643 kb on + strand, within Dsui_3517at 3781.728 kb on - strand, within Dsui_3517at 3781.750 kb on + strand, within Dsui_3517at 3781.773 kb on + strand, within Dsui_3517at 3781.773 kb on + strand, within Dsui_3517at 3781.820 kb on + strand, within Dsui_3517at 3781.823 kb on - strand, within Dsui_3517at 3781.829 kb on - strand, within Dsui_3517at 3781.879 kb on + strandat 3781.880 kb on + strandat 3781.880 kb on + strand, within Dsui_3517at 3781.880 kb on + strandat 3781.880 kb on + strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.888 kb on - strand, within Dsui_3517at 3781.965 kb on + strand, within Dsui_3517at 3781.973 kb on + strand, within Dsui_3517at 3781.973 kb on + strand, within Dsui_3517at 3781.981 kb on - strand, within Dsui_3517at 3781.981 kb on - strand, within Dsui_3517at 3782.015 kb on - strandat 3782.065 kb on - strandat 3782.065 kb on - strandat 3782.065 kb on - strandat 3782.109 kb on + strandat 3782.109 kb on + strandat 3782.122 kb on - strandat 3782.171 kb on + strandat 3782.232 kb on - strand, within Dsui_3518at 3782.269 kb on - strand, within Dsui_3518at 3782.325 kb on + strand, within Dsui_3518at 3782.333 kb on - strand, within Dsui_3518at 3782.333 kb on - strand, within Dsui_3518at 3782.369 kb on - strand, within Dsui_3518at 3782.393 kb on + strand, within Dsui_3518at 3782.401 kb on - strand, within Dsui_3518at 3782.404 kb on + strand, within Dsui_3518at 3782.465 kb on - strand, within Dsui_3518at 3782.525 kb on + strandat 3782.525 kb on + strandat 3782.526 kb on - strandat 3782.605 kb on + strandat 3782.605 kb on + strandat 3782.630 kb on + strandat 3782.662 kb on + strandat 3782.670 kb on - strandat 3782.671 kb on - strandat 3782.731 kb on - strandat 3782.831 kb on + strand, within Dsui_3519at 3782.839 kb on + strand, within Dsui_3519at 3782.839 kb on - strand, within Dsui_3519at 3782.847 kb on - strand, within Dsui_3519at 3782.944 kb on - strand, within Dsui_3519at 3782.976 kb on - strand, within Dsui_3519at 3783.007 kb on + strand, within Dsui_3519at 3783.178 kb on + strand, within Dsui_3519at 3783.193 kb on - strand, within Dsui_3519at 3783.217 kb on + strand, within Dsui_3519at 3783.302 kb on - strand, within Dsui_3519at 3783.332 kb on - strand, within Dsui_3519at 3783.384 kb on - strand, within Dsui_3519at 3783.514 kb on + strand, within Dsui_3519at 3783.522 kb on + strand, within Dsui_3519at 3783.551 kb on - strand, within Dsui_3519at 3783.590 kb on + strand, within Dsui_3519at 3783.612 kb on + strand, within Dsui_3519at 3783.640 kb on + strand, within Dsui_3519at 3783.664 kb on - strand, within Dsui_3519at 3783.752 kb on - strand, within Dsui_3519at 3784.104 kb on + strandat 3784.131 kb on + strandat 3784.188 kb on - strandat 3784.188 kb on - strandat 3784.543 kb on - strandat 3784.562 kb on - strandat 3784.586 kb on + strandat 3784.646 kb on - strand, within Dsui_3520at 3784.745 kb on - strand, within Dsui_3520at 3784.783 kb on - strand, within Dsui_3520at 3784.853 kb on + strand, within Dsui_3520at 3784.894 kb on - strand, within Dsui_3520at 3784.944 kb on - strand, within Dsui_3520at 3784.998 kb on - strand, within Dsui_3520at 3785.052 kb on + strand, within Dsui_3520

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,781,605 + Dsui_3517 0.43 -3.3
3,781,605 + Dsui_3517 0.43 +1.1
3,781,643 + Dsui_3517 0.48 +0.5
3,781,728 - Dsui_3517 0.58 -0.2
3,781,750 + Dsui_3517 0.61 +1.4
3,781,773 + Dsui_3517 0.63 -2.8
3,781,773 + Dsui_3517 0.63 -0.3
3,781,820 + Dsui_3517 0.69 -3.2
3,781,823 - Dsui_3517 0.69 +0.1
3,781,829 - Dsui_3517 0.70 -2.5
3,781,879 + +0.8
3,781,880 + -2.2
3,781,880 + Dsui_3517 0.76 -2.1
3,781,880 + -2.4
3,781,880 + Dsui_3517 0.76 -0.1
3,781,888 - Dsui_3517 0.77 -3.5
3,781,888 - Dsui_3517 0.77 +0.4
3,781,888 - Dsui_3517 0.77 +0.0
3,781,888 - Dsui_3517 0.77 +0.8
3,781,965 + Dsui_3517 0.87 -1.3
3,781,973 + Dsui_3517 0.87 +0.7
3,781,973 + Dsui_3517 0.87 -2.7
3,781,981 - Dsui_3517 0.88 +0.3
3,781,981 - Dsui_3517 0.88 +0.4
3,782,015 - -0.9
3,782,065 - -0.5
3,782,065 - +0.5
3,782,065 - +1.3
3,782,109 + -0.5
3,782,109 + -3.8
3,782,122 - +0.3
3,782,171 + -0.7
3,782,232 - Dsui_3518 0.20 +0.6
3,782,269 - Dsui_3518 0.30 +1.5
3,782,325 + Dsui_3518 0.45 -1.1
3,782,333 - Dsui_3518 0.47 -0.1
3,782,333 - Dsui_3518 0.47 -0.0
3,782,369 - Dsui_3518 0.57 +0.6
3,782,393 + Dsui_3518 0.64 -0.1
3,782,401 - Dsui_3518 0.66 +0.3
3,782,404 + Dsui_3518 0.67 +0.4
3,782,465 - Dsui_3518 0.84 +0.3
3,782,525 + +0.7
3,782,525 + +0.2
3,782,526 - +0.2
3,782,605 + +0.3
3,782,605 + +0.4
3,782,630 + -0.1
3,782,662 + -0.5
3,782,670 - +1.2
3,782,671 - +1.2
3,782,731 - +1.0
3,782,831 + Dsui_3519 0.15 -0.2
3,782,839 + Dsui_3519 0.16 +2.2
3,782,839 - Dsui_3519 0.16 +0.7
3,782,847 - Dsui_3519 0.16 -0.2
3,782,944 - Dsui_3519 0.23 +0.5
3,782,976 - Dsui_3519 0.25 +0.8
3,783,007 + Dsui_3519 0.27 -0.7
3,783,178 + Dsui_3519 0.38 -0.3
3,783,193 - Dsui_3519 0.39 +0.1
3,783,217 + Dsui_3519 0.40 -0.2
3,783,302 - Dsui_3519 0.46 +1.8
3,783,332 - Dsui_3519 0.48 -0.2
3,783,384 - Dsui_3519 0.51 +0.6
3,783,514 + Dsui_3519 0.60 +0.5
3,783,522 + Dsui_3519 0.60 -0.8
3,783,551 - Dsui_3519 0.62 +0.6
3,783,590 + Dsui_3519 0.64 -0.5
3,783,612 + Dsui_3519 0.66 -0.9
3,783,640 + Dsui_3519 0.68 -0.2
3,783,664 - Dsui_3519 0.69 +0.4
3,783,752 - Dsui_3519 0.75 +0.4
3,784,104 + +0.4
3,784,131 + +0.1
3,784,188 - +0.5
3,784,188 - +0.3
3,784,543 - -4.2
3,784,562 - -3.0
3,784,586 + -2.6
3,784,646 - Dsui_3520 0.11 -4.2
3,784,745 - Dsui_3520 0.14 -3.4
3,784,783 - Dsui_3520 0.15 -2.9
3,784,853 + Dsui_3520 0.18 -4.4
3,784,894 - Dsui_3520 0.19 -5.3
3,784,944 - Dsui_3520 0.21 -3.7
3,784,998 - Dsui_3520 0.22 -2.9
3,785,052 + Dsui_3520 0.24 -2.0

Or see this region's nucleotide sequence