Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3517 and Dsui_3518 are separated by 84 nucleotides Dsui_3518 and Dsui_3519 are separated by 72 nucleotides Dsui_3519 and Dsui_3520 are separated by 166 nucleotides
Dsui_3517: Dsui_3517 - putative membrane protein, at 3,781,246 to 3,782,076
_3517
Dsui_3518: Dsui_3518 - putative membrane protein, at 3,782,161 to 3,782,523
_3518
Dsui_3519: Dsui_3519 - 2-isopropylmalate synthase, bacterial type, at 3,782,596 to 3,784,137
_3519
Dsui_3520: Dsui_3520 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,784,304 to 3,787,411
_3520
Position (kb)
3782
3783
3784
3785 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3781.605 kb on + strand, within Dsui_3517 at 3781.605 kb on + strand, within Dsui_3517 at 3781.643 kb on + strand, within Dsui_3517 at 3781.728 kb on - strand, within Dsui_3517 at 3781.750 kb on + strand, within Dsui_3517 at 3781.773 kb on + strand, within Dsui_3517 at 3781.773 kb on + strand, within Dsui_3517 at 3781.820 kb on + strand, within Dsui_3517 at 3781.823 kb on - strand, within Dsui_3517 at 3781.829 kb on - strand, within Dsui_3517 at 3781.879 kb on + strand at 3781.880 kb on + strand at 3781.880 kb on + strand, within Dsui_3517 at 3781.880 kb on + strand at 3781.880 kb on + strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.888 kb on - strand, within Dsui_3517 at 3781.965 kb on + strand, within Dsui_3517 at 3781.973 kb on + strand, within Dsui_3517 at 3781.973 kb on + strand, within Dsui_3517 at 3781.981 kb on - strand, within Dsui_3517 at 3781.981 kb on - strand, within Dsui_3517 at 3782.015 kb on - strand at 3782.065 kb on - strand at 3782.065 kb on - strand at 3782.065 kb on - strand at 3782.109 kb on + strand at 3782.109 kb on + strand at 3782.122 kb on - strand at 3782.171 kb on + strand at 3782.232 kb on - strand, within Dsui_3518 at 3782.269 kb on - strand, within Dsui_3518 at 3782.325 kb on + strand, within Dsui_3518 at 3782.333 kb on - strand, within Dsui_3518 at 3782.333 kb on - strand, within Dsui_3518 at 3782.369 kb on - strand, within Dsui_3518 at 3782.393 kb on + strand, within Dsui_3518 at 3782.401 kb on - strand, within Dsui_3518 at 3782.404 kb on + strand, within Dsui_3518 at 3782.465 kb on - strand, within Dsui_3518 at 3782.525 kb on + strand at 3782.525 kb on + strand at 3782.526 kb on - strand at 3782.605 kb on + strand at 3782.605 kb on + strand at 3782.630 kb on + strand at 3782.662 kb on + strand at 3782.670 kb on - strand at 3782.671 kb on - strand at 3782.731 kb on - strand at 3782.831 kb on + strand, within Dsui_3519 at 3782.839 kb on + strand, within Dsui_3519 at 3782.839 kb on - strand, within Dsui_3519 at 3782.847 kb on - strand, within Dsui_3519 at 3782.944 kb on - strand, within Dsui_3519 at 3782.976 kb on - strand, within Dsui_3519 at 3783.007 kb on + strand, within Dsui_3519 at 3783.178 kb on + strand, within Dsui_3519 at 3783.193 kb on - strand, within Dsui_3519 at 3783.217 kb on + strand, within Dsui_3519 at 3783.302 kb on - strand, within Dsui_3519 at 3783.332 kb on - strand, within Dsui_3519 at 3783.384 kb on - strand, within Dsui_3519 at 3783.514 kb on + strand, within Dsui_3519 at 3783.522 kb on + strand, within Dsui_3519 at 3783.551 kb on - strand, within Dsui_3519 at 3783.590 kb on + strand, within Dsui_3519 at 3783.612 kb on + strand, within Dsui_3519 at 3783.640 kb on + strand, within Dsui_3519 at 3783.664 kb on - strand, within Dsui_3519 at 3783.752 kb on - strand, within Dsui_3519 at 3784.104 kb on + strand at 3784.131 kb on + strand at 3784.188 kb on - strand at 3784.188 kb on - strand at 3784.543 kb on - strand at 3784.562 kb on - strand at 3784.586 kb on + strand at 3784.646 kb on - strand, within Dsui_3520 at 3784.745 kb on - strand, within Dsui_3520 at 3784.783 kb on - strand, within Dsui_3520 at 3784.853 kb on + strand, within Dsui_3520 at 3784.894 kb on - strand, within Dsui_3520 at 3784.944 kb on - strand, within Dsui_3520 at 3784.998 kb on - strand, within Dsui_3520 at 3785.052 kb on + strand, within Dsui_3520
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 3,781,605 + Dsui_3517 0.43 -3.3 3,781,605 + Dsui_3517 0.43 +1.1 3,781,643 + Dsui_3517 0.48 +0.5 3,781,728 - Dsui_3517 0.58 -0.2 3,781,750 + Dsui_3517 0.61 +1.4 3,781,773 + Dsui_3517 0.63 -2.8 3,781,773 + Dsui_3517 0.63 -0.3 3,781,820 + Dsui_3517 0.69 -3.2 3,781,823 - Dsui_3517 0.69 +0.1 3,781,829 - Dsui_3517 0.70 -2.5 3,781,879 + +0.8 3,781,880 + -2.2 3,781,880 + Dsui_3517 0.76 -2.1 3,781,880 + -2.4 3,781,880 + Dsui_3517 0.76 -0.1 3,781,888 - Dsui_3517 0.77 -3.5 3,781,888 - Dsui_3517 0.77 +0.4 3,781,888 - Dsui_3517 0.77 +0.0 3,781,888 - Dsui_3517 0.77 +0.8 3,781,965 + Dsui_3517 0.87 -1.3 3,781,973 + Dsui_3517 0.87 +0.7 3,781,973 + Dsui_3517 0.87 -2.7 3,781,981 - Dsui_3517 0.88 +0.3 3,781,981 - Dsui_3517 0.88 +0.4 3,782,015 - -0.9 3,782,065 - -0.5 3,782,065 - +0.5 3,782,065 - +1.3 3,782,109 + -0.5 3,782,109 + -3.8 3,782,122 - +0.3 3,782,171 + -0.7 3,782,232 - Dsui_3518 0.20 +0.6 3,782,269 - Dsui_3518 0.30 +1.5 3,782,325 + Dsui_3518 0.45 -1.1 3,782,333 - Dsui_3518 0.47 -0.1 3,782,333 - Dsui_3518 0.47 -0.0 3,782,369 - Dsui_3518 0.57 +0.6 3,782,393 + Dsui_3518 0.64 -0.1 3,782,401 - Dsui_3518 0.66 +0.3 3,782,404 + Dsui_3518 0.67 +0.4 3,782,465 - Dsui_3518 0.84 +0.3 3,782,525 + +0.7 3,782,525 + +0.2 3,782,526 - +0.2 3,782,605 + +0.3 3,782,605 + +0.4 3,782,630 + -0.1 3,782,662 + -0.5 3,782,670 - +1.2 3,782,671 - +1.2 3,782,731 - +1.0 3,782,831 + Dsui_3519 0.15 -0.2 3,782,839 + Dsui_3519 0.16 +2.2 3,782,839 - Dsui_3519 0.16 +0.7 3,782,847 - Dsui_3519 0.16 -0.2 3,782,944 - Dsui_3519 0.23 +0.5 3,782,976 - Dsui_3519 0.25 +0.8 3,783,007 + Dsui_3519 0.27 -0.7 3,783,178 + Dsui_3519 0.38 -0.3 3,783,193 - Dsui_3519 0.39 +0.1 3,783,217 + Dsui_3519 0.40 -0.2 3,783,302 - Dsui_3519 0.46 +1.8 3,783,332 - Dsui_3519 0.48 -0.2 3,783,384 - Dsui_3519 0.51 +0.6 3,783,514 + Dsui_3519 0.60 +0.5 3,783,522 + Dsui_3519 0.60 -0.8 3,783,551 - Dsui_3519 0.62 +0.6 3,783,590 + Dsui_3519 0.64 -0.5 3,783,612 + Dsui_3519 0.66 -0.9 3,783,640 + Dsui_3519 0.68 -0.2 3,783,664 - Dsui_3519 0.69 +0.4 3,783,752 - Dsui_3519 0.75 +0.4 3,784,104 + +0.4 3,784,131 + +0.1 3,784,188 - +0.5 3,784,188 - +0.3 3,784,543 - -4.2 3,784,562 - -3.0 3,784,586 + -2.6 3,784,646 - Dsui_3520 0.11 -4.2 3,784,745 - Dsui_3520 0.14 -3.4 3,784,783 - Dsui_3520 0.15 -2.9 3,784,853 + Dsui_3520 0.18 -4.4 3,784,894 - Dsui_3520 0.19 -5.3 3,784,944 - Dsui_3520 0.21 -3.7 3,784,998 - Dsui_3520 0.22 -2.9 3,785,052 + Dsui_3520 0.24 -2.0
Or see this region's nucleotide sequence