Strain Fitness in Dechlorosoma suillum PS around Dsui_3331

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3328 and Dsui_3329 are separated by 242 nucleotidesDsui_3329 and Dsui_3330 are separated by 36 nucleotidesDsui_3330 and Dsui_3331 are separated by 4 nucleotidesDsui_3331 and Dsui_3332 are separated by 205 nucleotidesDsui_3332 and Dsui_3333 are separated by 165 nucleotides Dsui_3328: Dsui_3328 - cytochrome c556, at 3,568,351 to 3,568,821 _3328 Dsui_3329: Dsui_3329 - hypothetical protein, at 3,569,064 to 3,569,381 _3329 Dsui_3330: Dsui_3330 - hypothetical protein, at 3,569,418 to 3,569,675 _3330 Dsui_3331: Dsui_3331 - adenylosuccinate lyase, at 3,569,680 to 3,571,047 _3331 Dsui_3332: Dsui_3332 - glutathione S-transferase, at 3,571,253 to 3,571,861 _3332 Dsui_3333: Dsui_3333 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,572,027 to 3,573,034 _3333 Position (kb) 3569 3570 3571 3572Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3568.686 kb on + strand, within Dsui_3328at 3568.748 kb on - strand, within Dsui_3328at 3568.780 kb on - strandat 3568.804 kb on - strandat 3568.804 kb on - strandat 3568.810 kb on - strandat 3568.861 kb on + strandat 3568.905 kb on + strandat 3569.079 kb on - strandat 3569.095 kb on + strandat 3569.174 kb on + strand, within Dsui_3329at 3569.230 kb on + strand, within Dsui_3329at 3569.252 kb on - strand, within Dsui_3329at 3569.321 kb on + strand, within Dsui_3329at 3569.321 kb on + strand, within Dsui_3329at 3569.321 kb on + strand, within Dsui_3329at 3569.321 kb on + strand, within Dsui_3329at 3569.329 kb on - strand, within Dsui_3329at 3569.329 kb on - strand, within Dsui_3329at 3569.336 kb on + strand, within Dsui_3329at 3569.344 kb on - strand, within Dsui_3329at 3569.389 kb on + strandat 3569.442 kb on - strandat 3569.458 kb on + strand, within Dsui_3330at 3569.581 kb on + strand, within Dsui_3330at 3569.593 kb on + strand, within Dsui_3330at 3569.673 kb on - strandat 3571.111 kb on - strandat 3571.130 kb on + strandat 3571.166 kb on + strandat 3571.181 kb on + strandat 3571.181 kb on + strandat 3571.189 kb on - strandat 3571.218 kb on - strandat 3571.286 kb on - strandat 3571.293 kb on + strandat 3571.293 kb on + strandat 3571.293 kb on + strandat 3571.301 kb on - strandat 3571.321 kb on + strand, within Dsui_3332at 3571.366 kb on - strand, within Dsui_3332at 3571.467 kb on + strand, within Dsui_3332at 3571.530 kb on + strand, within Dsui_3332at 3571.650 kb on + strand, within Dsui_3332at 3571.690 kb on + strand, within Dsui_3332at 3571.699 kb on - strand, within Dsui_3332at 3571.732 kb on - strandat 3571.754 kb on - strand, within Dsui_3332at 3571.832 kb on + strandat 3571.871 kb on - strandat 3571.923 kb on - strandat 3571.941 kb on - strandat 3571.946 kb on - strandat 3571.951 kb on + strandat 3571.970 kb on + strandat 3571.979 kb on - strandat 3571.989 kb on - strandat 3571.997 kb on + strandat 3571.997 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,568,686 + Dsui_3328 0.71 -0.7
3,568,748 - Dsui_3328 0.84 +0.4
3,568,780 - +1.1
3,568,804 - +0.9
3,568,804 - +0.8
3,568,810 - +0.8
3,568,861 + -0.1
3,568,905 + +0.5
3,569,079 - +0.6
3,569,095 + +0.8
3,569,174 + Dsui_3329 0.35 -0.1
3,569,230 + Dsui_3329 0.52 -0.7
3,569,252 - Dsui_3329 0.59 +0.5
3,569,321 + Dsui_3329 0.81 +1.0
3,569,321 + Dsui_3329 0.81 -0.4
3,569,321 + Dsui_3329 0.81 +0.4
3,569,321 + Dsui_3329 0.81 -2.0
3,569,329 - Dsui_3329 0.83 +0.8
3,569,329 - Dsui_3329 0.83 -0.2
3,569,336 + Dsui_3329 0.86 +0.7
3,569,344 - Dsui_3329 0.88 +1.6
3,569,389 + +0.2
3,569,442 - +0.4
3,569,458 + Dsui_3330 0.16 -3.7
3,569,581 + Dsui_3330 0.63 -3.2
3,569,593 + Dsui_3330 0.68 -0.1
3,569,673 - -2.0
3,571,111 - -0.5
3,571,130 + +2.1
3,571,166 + -1.2
3,571,181 + +0.4
3,571,181 + -1.9
3,571,189 - -1.4
3,571,218 - -3.5
3,571,286 - -1.8
3,571,293 + +0.7
3,571,293 + +0.4
3,571,293 + -1.5
3,571,301 - -2.0
3,571,321 + Dsui_3332 0.11 +0.7
3,571,366 - Dsui_3332 0.19 -3.6
3,571,467 + Dsui_3332 0.35 +1.7
3,571,530 + Dsui_3332 0.45 -0.5
3,571,650 + Dsui_3332 0.65 -0.2
3,571,690 + Dsui_3332 0.72 -0.3
3,571,699 - Dsui_3332 0.73 -3.5
3,571,732 - -2.5
3,571,754 - Dsui_3332 0.82 -1.4
3,571,832 + +0.6
3,571,871 - +0.1
3,571,923 - -0.5
3,571,941 - -1.2
3,571,946 - -1.9
3,571,951 + -0.2
3,571,970 + +0.5
3,571,979 - +0.1
3,571,989 - +1.4
3,571,997 + -0.2
3,571,997 + +0.7

Or see this region's nucleotide sequence