Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3328 and Dsui_3329 are separated by 242 nucleotides Dsui_3329 and Dsui_3330 are separated by 36 nucleotides Dsui_3330 and Dsui_3331 are separated by 4 nucleotides Dsui_3331 and Dsui_3332 are separated by 205 nucleotides Dsui_3332 and Dsui_3333 are separated by 165 nucleotides
Dsui_3328: Dsui_3328 - cytochrome c556, at 3,568,351 to 3,568,821
_3328
Dsui_3329: Dsui_3329 - hypothetical protein, at 3,569,064 to 3,569,381
_3329
Dsui_3330: Dsui_3330 - hypothetical protein, at 3,569,418 to 3,569,675
_3330
Dsui_3331: Dsui_3331 - adenylosuccinate lyase, at 3,569,680 to 3,571,047
_3331
Dsui_3332: Dsui_3332 - glutathione S-transferase, at 3,571,253 to 3,571,861
_3332
Dsui_3333: Dsui_3333 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,572,027 to 3,573,034
_3333
Position (kb)
3569
3570
3571
3572 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3568.686 kb on + strand, within Dsui_3328 at 3568.748 kb on - strand, within Dsui_3328 at 3568.780 kb on - strand at 3568.804 kb on - strand at 3568.804 kb on - strand at 3568.810 kb on - strand at 3568.861 kb on + strand at 3568.905 kb on + strand at 3569.079 kb on - strand at 3569.095 kb on + strand at 3569.174 kb on + strand, within Dsui_3329 at 3569.230 kb on + strand, within Dsui_3329 at 3569.252 kb on - strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.329 kb on - strand, within Dsui_3329 at 3569.329 kb on - strand, within Dsui_3329 at 3569.336 kb on + strand, within Dsui_3329 at 3569.344 kb on - strand, within Dsui_3329 at 3569.389 kb on + strand at 3569.442 kb on - strand at 3569.458 kb on + strand, within Dsui_3330 at 3569.581 kb on + strand, within Dsui_3330 at 3569.593 kb on + strand, within Dsui_3330 at 3569.673 kb on - strand at 3571.111 kb on - strand at 3571.130 kb on + strand at 3571.166 kb on + strand at 3571.181 kb on + strand at 3571.181 kb on + strand at 3571.189 kb on - strand at 3571.218 kb on - strand at 3571.286 kb on - strand at 3571.293 kb on + strand at 3571.293 kb on + strand at 3571.293 kb on + strand at 3571.301 kb on - strand at 3571.321 kb on + strand, within Dsui_3332 at 3571.366 kb on - strand, within Dsui_3332 at 3571.467 kb on + strand, within Dsui_3332 at 3571.530 kb on + strand, within Dsui_3332 at 3571.650 kb on + strand, within Dsui_3332 at 3571.690 kb on + strand, within Dsui_3332 at 3571.699 kb on - strand, within Dsui_3332 at 3571.732 kb on - strand at 3571.754 kb on - strand, within Dsui_3332 at 3571.832 kb on + strand at 3571.871 kb on - strand at 3571.923 kb on - strand at 3571.941 kb on - strand at 3571.946 kb on - strand at 3571.951 kb on + strand at 3571.970 kb on + strand at 3571.979 kb on - strand at 3571.989 kb on - strand at 3571.997 kb on + strand at 3571.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 3,568,686 + Dsui_3328 0.71 -0.7 3,568,748 - Dsui_3328 0.84 +0.4 3,568,780 - +1.1 3,568,804 - +0.9 3,568,804 - +0.8 3,568,810 - +0.8 3,568,861 + -0.1 3,568,905 + +0.5 3,569,079 - +0.6 3,569,095 + +0.8 3,569,174 + Dsui_3329 0.35 -0.1 3,569,230 + Dsui_3329 0.52 -0.7 3,569,252 - Dsui_3329 0.59 +0.5 3,569,321 + Dsui_3329 0.81 +1.0 3,569,321 + Dsui_3329 0.81 -0.4 3,569,321 + Dsui_3329 0.81 +0.4 3,569,321 + Dsui_3329 0.81 -2.0 3,569,329 - Dsui_3329 0.83 +0.8 3,569,329 - Dsui_3329 0.83 -0.2 3,569,336 + Dsui_3329 0.86 +0.7 3,569,344 - Dsui_3329 0.88 +1.6 3,569,389 + +0.2 3,569,442 - +0.4 3,569,458 + Dsui_3330 0.16 -3.7 3,569,581 + Dsui_3330 0.63 -3.2 3,569,593 + Dsui_3330 0.68 -0.1 3,569,673 - -2.0 3,571,111 - -0.5 3,571,130 + +2.1 3,571,166 + -1.2 3,571,181 + +0.4 3,571,181 + -1.9 3,571,189 - -1.4 3,571,218 - -3.5 3,571,286 - -1.8 3,571,293 + +0.7 3,571,293 + +0.4 3,571,293 + -1.5 3,571,301 - -2.0 3,571,321 + Dsui_3332 0.11 +0.7 3,571,366 - Dsui_3332 0.19 -3.6 3,571,467 + Dsui_3332 0.35 +1.7 3,571,530 + Dsui_3332 0.45 -0.5 3,571,650 + Dsui_3332 0.65 -0.2 3,571,690 + Dsui_3332 0.72 -0.3 3,571,699 - Dsui_3332 0.73 -3.5 3,571,732 - -2.5 3,571,754 - Dsui_3332 0.82 -1.4 3,571,832 + +0.6 3,571,871 - +0.1 3,571,923 - -0.5 3,571,941 - -1.2 3,571,946 - -1.9 3,571,951 + -0.2 3,571,970 + +0.5 3,571,979 - +0.1 3,571,989 - +1.4 3,571,997 + -0.2 3,571,997 + +0.7
Or see this region's nucleotide sequence