Strain Fitness in Dechlorosoma suillum PS around Dsui_3198

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3197 and Dsui_3198 are separated by 93 nucleotidesDsui_3198 and Dsui_3199 are separated by 142 nucleotidesDsui_3199 and Dsui_3200 overlap by 1 nucleotidesDsui_3200 and Dsui_3201 are separated by 20 nucleotides Dsui_3197: Dsui_3197 - aspartate-semialdehyde dehydrogenase, gamma-proteobacterial, at 3,433,033 to 3,434,166 _3197 Dsui_3198: Dsui_3198 - 3-isopropylmalate dehydrogenase, at 3,434,260 to 3,435,324 _3198 Dsui_3199: Dsui_3199 - 3-isopropylmalate dehydratase, small subunit, at 3,435,467 to 3,436,105 _3199 Dsui_3200: Dsui_3200 - putative small secreted protein, at 3,436,105 to 3,436,227 _3200 Dsui_3201: Dsui_3201 - 3-isopropylmalate dehydratase, large subunit, at 3,436,248 to 3,437,654 _3201 Position (kb) 3434 3435 3436Strain fitness (log2 ratio) -2 -1 0 1at 3434.206 kb on - strandat 3434.222 kb on + strandat 3434.223 kb on + strandat 3434.231 kb on - strandat 3434.258 kb on + strandat 3435.349 kb on - strandat 3435.373 kb on + strandat 3435.381 kb on - strandat 3436.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,434,206 - +0.3
3,434,222 + -0.3
3,434,223 + +0.6
3,434,231 - +0.7
3,434,258 + -1.8
3,435,349 - +1.5
3,435,373 + -0.1
3,435,381 - -2.2
3,436,237 - -0.0

Or see this region's nucleotide sequence