Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3033 and Dsui_3034 are separated by 372 nucleotides Dsui_3034 and Dsui_3035 are separated by 116 nucleotides
Dsui_3033: Dsui_3033 - acetate kinase, at 3,245,257 to 3,246,450
_3033
Dsui_3034: Dsui_3034 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, at 3,246,823 to 3,249,732
_3034
Dsui_3035: Dsui_3035 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,249,849 to 3,251,012
_3035
Position (kb)
3246
3247
3248
3249
3250 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3245.874 kb on - strand, within Dsui_3033 at 3245.889 kb on - strand, within Dsui_3033 at 3245.935 kb on + strand, within Dsui_3033 at 3246.241 kb on - strand, within Dsui_3033 at 3246.299 kb on + strand, within Dsui_3033 at 3246.364 kb on + strand at 3246.372 kb on - strand at 3246.428 kb on + strand at 3246.446 kb on - strand at 3246.507 kb on - strand at 3246.558 kb on - strand at 3246.563 kb on - strand at 3246.564 kb on - strand at 3246.570 kb on + strand at 3246.693 kb on - strand at 3247.108 kb on + strand at 3247.111 kb on - strand at 3247.143 kb on + strand, within Dsui_3034 at 3247.167 kb on - strand, within Dsui_3034 at 3247.269 kb on + strand, within Dsui_3034 at 3247.277 kb on - strand, within Dsui_3034 at 3247.277 kb on - strand, within Dsui_3034 at 3247.428 kb on + strand, within Dsui_3034 at 3247.436 kb on - strand, within Dsui_3034 at 3247.436 kb on - strand, within Dsui_3034 at 3247.496 kb on - strand at 3247.588 kb on - strand at 3247.697 kb on + strand, within Dsui_3034 at 3247.705 kb on - strand, within Dsui_3034 at 3247.724 kb on - strand, within Dsui_3034 at 3247.731 kb on + strand, within Dsui_3034 at 3247.787 kb on + strand, within Dsui_3034 at 3247.814 kb on + strand, within Dsui_3034 at 3247.864 kb on + strand, within Dsui_3034 at 3247.989 kb on - strand, within Dsui_3034 at 3247.991 kb on + strand, within Dsui_3034 at 3248.013 kb on + strand, within Dsui_3034 at 3248.063 kb on + strand, within Dsui_3034 at 3248.068 kb on + strand, within Dsui_3034 at 3248.068 kb on - strand, within Dsui_3034 at 3248.123 kb on - strand, within Dsui_3034 at 3248.125 kb on + strand, within Dsui_3034 at 3248.162 kb on + strand, within Dsui_3034 at 3248.200 kb on - strand, within Dsui_3034 at 3248.350 kb on + strand, within Dsui_3034 at 3248.358 kb on - strand, within Dsui_3034 at 3248.387 kb on - strand, within Dsui_3034 at 3248.459 kb on - strand, within Dsui_3034 at 3248.460 kb on + strand, within Dsui_3034 at 3248.475 kb on - strand, within Dsui_3034 at 3248.489 kb on - strand, within Dsui_3034 at 3248.547 kb on + strand, within Dsui_3034 at 3248.644 kb on + strand, within Dsui_3034 at 3248.644 kb on + strand, within Dsui_3034 at 3248.644 kb on + strand, within Dsui_3034 at 3248.652 kb on - strand, within Dsui_3034 at 3248.880 kb on + strand, within Dsui_3034 at 3248.888 kb on - strand, within Dsui_3034 at 3248.909 kb on + strand, within Dsui_3034 at 3248.917 kb on - strand, within Dsui_3034 at 3248.917 kb on - strand at 3249.066 kb on + strand, within Dsui_3034 at 3249.094 kb on + strand, within Dsui_3034 at 3249.102 kb on - strand, within Dsui_3034 at 3249.123 kb on + strand, within Dsui_3034 at 3249.268 kb on - strand, within Dsui_3034 at 3249.293 kb on - strand, within Dsui_3034 at 3249.404 kb on + strand, within Dsui_3034 at 3249.431 kb on + strand, within Dsui_3034 at 3249.439 kb on + strand, within Dsui_3034 at 3249.604 kb on + strand at 3249.728 kb on + strand at 3249.759 kb on + strand at 3249.798 kb on + strand at 3249.806 kb on - strand at 3249.984 kb on - strand, within Dsui_3035 at 3250.014 kb on - strand, within Dsui_3035 at 3250.061 kb on + strand, within Dsui_3035 at 3250.061 kb on + strand, within Dsui_3035 at 3250.120 kb on + strand, within Dsui_3035 at 3250.338 kb on - strand, within Dsui_3035 at 3250.376 kb on + strand, within Dsui_3035 at 3250.457 kb on + strand, within Dsui_3035 at 3250.476 kb on - strand, within Dsui_3035 at 3250.487 kb on + strand, within Dsui_3035 at 3250.649 kb on + strand, within Dsui_3035 at 3250.649 kb on + strand, within Dsui_3035 at 3250.657 kb on - strand, within Dsui_3035
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 3,245,874 - Dsui_3033 0.52 -4.4 3,245,889 - Dsui_3033 0.53 -3.6 3,245,935 + Dsui_3033 0.57 -2.3 3,246,241 - Dsui_3033 0.82 -3.7 3,246,299 + Dsui_3033 0.87 -3.3 3,246,364 + -2.5 3,246,372 - -3.9 3,246,428 + -1.8 3,246,446 - -3.5 3,246,507 - +0.6 3,246,558 - -1.3 3,246,563 - -2.1 3,246,564 - -0.6 3,246,570 + +0.5 3,246,693 - +0.3 3,247,108 + +0.6 3,247,111 - -3.1 3,247,143 + Dsui_3034 0.11 -0.9 3,247,167 - Dsui_3034 0.12 -2.1 3,247,269 + Dsui_3034 0.15 +0.1 3,247,277 - Dsui_3034 0.16 +0.4 3,247,277 - Dsui_3034 0.16 -0.4 3,247,428 + Dsui_3034 0.21 +0.1 3,247,436 - Dsui_3034 0.21 -0.6 3,247,436 - Dsui_3034 0.21 -1.5 3,247,496 - +0.3 3,247,588 - -2.0 3,247,697 + Dsui_3034 0.30 +0.4 3,247,705 - Dsui_3034 0.30 -4.6 3,247,724 - Dsui_3034 0.31 -2.1 3,247,731 + Dsui_3034 0.31 -2.1 3,247,787 + Dsui_3034 0.33 -0.2 3,247,814 + Dsui_3034 0.34 +0.4 3,247,864 + Dsui_3034 0.36 +0.5 3,247,989 - Dsui_3034 0.40 -0.9 3,247,991 + Dsui_3034 0.40 -3.6 3,248,013 + Dsui_3034 0.41 +0.0 3,248,063 + Dsui_3034 0.43 +1.0 3,248,068 + Dsui_3034 0.43 +0.5 3,248,068 - Dsui_3034 0.43 -2.4 3,248,123 - Dsui_3034 0.45 -0.4 3,248,125 + Dsui_3034 0.45 -0.7 3,248,162 + Dsui_3034 0.46 -0.3 3,248,200 - Dsui_3034 0.47 -3.0 3,248,350 + Dsui_3034 0.52 -0.2 3,248,358 - Dsui_3034 0.53 -1.2 3,248,387 - Dsui_3034 0.54 -0.9 3,248,459 - Dsui_3034 0.56 -4.0 3,248,460 + Dsui_3034 0.56 +1.0 3,248,475 - Dsui_3034 0.57 -0.9 3,248,489 - Dsui_3034 0.57 +1.6 3,248,547 + Dsui_3034 0.59 +0.7 3,248,644 + Dsui_3034 0.63 +0.8 3,248,644 + Dsui_3034 0.63 +1.1 3,248,644 + Dsui_3034 0.63 -0.2 3,248,652 - Dsui_3034 0.63 -0.5 3,248,880 + Dsui_3034 0.71 -0.4 3,248,888 - Dsui_3034 0.71 -3.8 3,248,909 + Dsui_3034 0.72 +1.1 3,248,917 - Dsui_3034 0.72 -3.4 3,248,917 - -2.0 3,249,066 + Dsui_3034 0.77 -0.1 3,249,094 + Dsui_3034 0.78 +0.1 3,249,102 - Dsui_3034 0.78 -1.7 3,249,123 + Dsui_3034 0.79 -0.3 3,249,268 - Dsui_3034 0.84 -1.7 3,249,293 - Dsui_3034 0.85 -3.3 3,249,404 + Dsui_3034 0.89 +0.8 3,249,431 + Dsui_3034 0.90 +0.4 3,249,439 + Dsui_3034 0.90 +0.4 3,249,604 + +0.2 3,249,728 + +0.8 3,249,759 + +0.8 3,249,798 + +0.8 3,249,806 - -1.5 3,249,984 - Dsui_3035 0.12 -0.2 3,250,014 - Dsui_3035 0.14 -0.6 3,250,061 + Dsui_3035 0.18 +0.7 3,250,061 + Dsui_3035 0.18 -0.5 3,250,120 + Dsui_3035 0.23 +0.4 3,250,338 - Dsui_3035 0.42 -2.5 3,250,376 + Dsui_3035 0.45 +2.3 3,250,457 + Dsui_3035 0.52 -0.4 3,250,476 - Dsui_3035 0.54 -2.9 3,250,487 + Dsui_3035 0.55 +1.5 3,250,649 + Dsui_3035 0.69 -0.2 3,250,649 + Dsui_3035 0.69 -0.0 3,250,657 - Dsui_3035 0.69 -1.9
Or see this region's nucleotide sequence