Strain Fitness in Dechlorosoma suillum PS around Dsui_2905

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2904 and Dsui_2905 are separated by 210 nucleotidesDsui_2905 and Dsui_2906 are separated by 64 nucleotidesDsui_2906 and Dsui_2907 are separated by 252 nucleotides Dsui_2904: Dsui_2904 - threonine synthase, at 3,106,560 to 3,107,999 _2904 Dsui_2905: Dsui_2905 - flagellin/flagellar hook associated protein, at 3,108,210 to 3,109,388 _2905 Dsui_2906: Dsui_2906 - Uncharacterized conserved protein (DUF2249), at 3,109,453 to 3,109,710 _2906 Dsui_2907: Dsui_2907 - homoserine dehydrogenase, at 3,109,963 to 3,111,273 _2907 Position (kb) 3108 3109 3110Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3108.051 kb on - strandat 3108.136 kb on - strandat 3108.255 kb on - strandat 3108.451 kb on + strand, within Dsui_2905at 3108.514 kb on + strand, within Dsui_2905at 3108.618 kb on - strand, within Dsui_2905at 3108.631 kb on + strandat 3108.662 kb on - strand, within Dsui_2905at 3108.686 kb on + strand, within Dsui_2905at 3108.741 kb on + strandat 3108.751 kb on - strand, within Dsui_2905at 3108.755 kb on + strandat 3108.912 kb on + strandat 3109.020 kb on + strand, within Dsui_2905at 3109.075 kb on - strand, within Dsui_2905at 3109.185 kb on + strand, within Dsui_2905at 3109.185 kb on + strandat 3109.193 kb on - strand, within Dsui_2905at 3109.226 kb on - strand, within Dsui_2905at 3109.226 kb on - strand, within Dsui_2905at 3109.248 kb on + strand, within Dsui_2905at 3109.346 kb on + strandat 3109.356 kb on + strandat 3109.413 kb on - strandat 3109.450 kb on + strandat 3109.461 kb on + strandat 3109.678 kb on + strand, within Dsui_2906at 3109.713 kb on - strandat 3109.713 kb on - strandat 3109.768 kb on - strandat 3109.781 kb on + strandat 3109.798 kb on + strandat 3109.799 kb on - strandat 3109.830 kb on - strandat 3109.892 kb on - strandat 3109.940 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,108,051 - +1.1
3,108,136 - -0.9
3,108,255 - -2.2
3,108,451 + Dsui_2905 0.20 -4.6
3,108,514 + Dsui_2905 0.26 -4.4
3,108,618 - Dsui_2905 0.35 -3.5
3,108,631 + -3.1
3,108,662 - Dsui_2905 0.38 -0.1
3,108,686 + Dsui_2905 0.40 -1.1
3,108,741 + -2.1
3,108,751 - Dsui_2905 0.46 -1.9
3,108,755 + -0.8
3,108,912 + -1.4
3,109,020 + Dsui_2905 0.69 -4.1
3,109,075 - Dsui_2905 0.73 -2.9
3,109,185 + Dsui_2905 0.83 -1.5
3,109,185 + +0.2
3,109,193 - Dsui_2905 0.83 +0.0
3,109,226 - Dsui_2905 0.86 +0.9
3,109,226 - Dsui_2905 0.86 -1.6
3,109,248 + Dsui_2905 0.88 -0.5
3,109,346 + +0.2
3,109,356 + -0.2
3,109,413 - -0.3
3,109,450 + -2.9
3,109,461 + -0.4
3,109,678 + Dsui_2906 0.87 +0.6
3,109,713 - -0.3
3,109,713 - +0.3
3,109,768 - -0.9
3,109,781 + +0.7
3,109,798 + -0.7
3,109,799 - -2.0
3,109,830 - -0.5
3,109,892 - +0.5
3,109,940 + -0.3

Or see this region's nucleotide sequence