Strain Fitness in Dechlorosoma suillum PS around Dsui_2889

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2886 and Dsui_2887 overlap by 1 nucleotidesDsui_2887 and Dsui_2888 overlap by 4 nucleotidesDsui_2888 and Dsui_2889 are separated by 42 nucleotidesDsui_2889 and Dsui_2890 are separated by 53 nucleotides Dsui_2886: Dsui_2886 - intracellular septation protein A, at 3,084,168 to 3,084,707 _2886 Dsui_2887: Dsui_2887 - hypothetical protein, at 3,084,707 to 3,085,009 _2887 Dsui_2888: Dsui_2888 - stress-induced morphogen, at 3,085,006 to 3,085,278 _2888 Dsui_2889: Dsui_2889 - parvulin-like peptidyl-prolyl isomerase, at 3,085,321 to 3,086,121 _2889 Dsui_2890: Dsui_2890 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,086,175 to 3,088,103 _2890 Position (kb) 3085 3086 3087Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3084.664 kb on + strandat 3084.820 kb on - strandat 3084.829 kb on + strand, within Dsui_2887at 3084.906 kb on + strand, within Dsui_2887at 3084.907 kb on + strand, within Dsui_2887at 3084.970 kb on + strand, within Dsui_2887at 3085.133 kb on + strand, within Dsui_2888at 3085.141 kb on - strand, within Dsui_2888at 3085.161 kb on - strand, within Dsui_2888at 3085.269 kb on - strandat 3085.305 kb on + strandat 3085.373 kb on - strandat 3085.478 kb on + strand, within Dsui_2889at 3085.630 kb on + strand, within Dsui_2889at 3085.718 kb on - strand, within Dsui_2889at 3085.745 kb on - strandat 3085.826 kb on + strand, within Dsui_2889at 3085.870 kb on + strand, within Dsui_2889at 3086.024 kb on + strand, within Dsui_2889at 3086.024 kb on + strand, within Dsui_2889at 3086.034 kb on + strand, within Dsui_2889at 3086.357 kb on + strandat 3086.365 kb on - strandat 3086.404 kb on + strandat 3086.468 kb on - strand, within Dsui_2890at 3086.640 kb on + strand, within Dsui_2890at 3086.648 kb on - strand, within Dsui_2890at 3086.659 kb on + strand, within Dsui_2890at 3086.748 kb on - strand, within Dsui_2890at 3086.770 kb on - strand, within Dsui_2890at 3086.808 kb on - strandat 3086.823 kb on + strand, within Dsui_2890at 3086.826 kb on - strand, within Dsui_2890at 3086.857 kb on + strand, within Dsui_2890at 3086.890 kb on + strand, within Dsui_2890at 3087.017 kb on - strand, within Dsui_2890

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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3,084,664 + -0.5
3,084,820 - -1.6
3,084,829 + Dsui_2887 0.40 +0.1
3,084,906 + Dsui_2887 0.66 +0.5
3,084,907 + Dsui_2887 0.66 -0.3
3,084,970 + Dsui_2887 0.87 -1.1
3,085,133 + Dsui_2888 0.47 +0.9
3,085,141 - Dsui_2888 0.49 -1.5
3,085,161 - Dsui_2888 0.57 -0.0
3,085,269 - +0.5
3,085,305 + +1.1
3,085,373 - +2.1
3,085,478 + Dsui_2889 0.20 +1.4
3,085,630 + Dsui_2889 0.39 +1.1
3,085,718 - Dsui_2889 0.50 +1.1
3,085,745 - +2.4
3,085,826 + Dsui_2889 0.63 +1.5
3,085,870 + Dsui_2889 0.69 +2.3
3,086,024 + Dsui_2889 0.88 +1.6
3,086,024 + Dsui_2889 0.88 +0.7
3,086,034 + Dsui_2889 0.89 +1.0
3,086,357 + -0.8
3,086,365 - -2.8
3,086,404 + -0.4
3,086,468 - Dsui_2890 0.15 -0.3
3,086,640 + Dsui_2890 0.24 -2.9
3,086,648 - Dsui_2890 0.25 +1.3
3,086,659 + Dsui_2890 0.25 +0.2
3,086,748 - Dsui_2890 0.30 -0.9
3,086,770 - Dsui_2890 0.31 +0.5
3,086,808 - -1.1
3,086,823 + Dsui_2890 0.34 -0.6
3,086,826 - Dsui_2890 0.34 -2.2
3,086,857 + Dsui_2890 0.35 +0.5
3,086,890 + Dsui_2890 0.37 -0.4
3,087,017 - Dsui_2890 0.44 +1.3

Or see this region's nucleotide sequence