Strain Fitness in Dechlorosoma suillum PS around Dsui_2799

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2798 and Dsui_2799 are separated by 108 nucleotidesDsui_2799 and Dsui_2800 overlap by 1 nucleotides Dsui_2798: Dsui_2798 - arabinose efflux permease family protein, at 2,967,161 to 2,968,381 _2798 Dsui_2799: Dsui_2799 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, at 2,968,490 to 2,970,502 _2799 Dsui_2800: Dsui_2800 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,970,502 to 2,971,950 _2800 Position (kb) 2968 2969 2970 2971Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2967.789 kb on + strand, within Dsui_2798at 2967.789 kb on + strand, within Dsui_2798at 2968.041 kb on + strand, within Dsui_2798at 2968.091 kb on - strand, within Dsui_2798at 2968.116 kb on + strand, within Dsui_2798at 2968.130 kb on + strand, within Dsui_2798at 2968.149 kb on - strandat 2968.173 kb on - strand, within Dsui_2798at 2968.218 kb on + strand, within Dsui_2798at 2968.233 kb on + strand, within Dsui_2798at 2968.233 kb on + strand, within Dsui_2798at 2968.241 kb on - strandat 2968.297 kb on + strandat 2968.316 kb on + strandat 2968.418 kb on - strandat 2968.540 kb on - strandat 2968.615 kb on - strandat 2968.633 kb on + strandat 2968.710 kb on - strand, within Dsui_2799at 2968.754 kb on + strandat 2968.764 kb on + strandat 2968.820 kb on + strandat 2968.844 kb on - strand, within Dsui_2799at 2968.909 kb on + strandat 2968.953 kb on + strand, within Dsui_2799at 2969.116 kb on + strandat 2969.116 kb on + strand, within Dsui_2799at 2969.340 kb on - strand, within Dsui_2799at 2969.381 kb on - strand, within Dsui_2799at 2969.555 kb on - strand, within Dsui_2799at 2969.563 kb on + strandat 2969.694 kb on + strandat 2969.868 kb on - strand, within Dsui_2799at 2970.108 kb on - strand, within Dsui_2799at 2970.263 kb on + strandat 2970.351 kb on - strandat 2970.396 kb on - strandat 2970.403 kb on - strandat 2970.436 kb on - strandat 2970.616 kb on - strandat 2970.630 kb on - strandat 2970.634 kb on - strandat 2970.635 kb on - strandat 2970.654 kb on + strand, within Dsui_2800at 2970.662 kb on - strandat 2970.662 kb on - strand, within Dsui_2800at 2970.678 kb on - strand, within Dsui_2800at 2970.715 kb on - strand, within Dsui_2800at 2970.721 kb on - strand, within Dsui_2800at 2970.721 kb on - strand, within Dsui_2800at 2970.721 kb on - strand, within Dsui_2800at 2970.728 kb on - strandat 2970.767 kb on + strandat 2970.842 kb on + strand, within Dsui_2800at 2970.861 kb on - strand, within Dsui_2800at 2971.005 kb on + strand, within Dsui_2800at 2971.037 kb on + strandat 2971.054 kb on - strand, within Dsui_2800at 2971.062 kb on + strand, within Dsui_2800at 2971.138 kb on + strandat 2971.138 kb on - strand, within Dsui_2800at 2971.166 kb on - strand, within Dsui_2800at 2971.198 kb on + strand, within Dsui_2800at 2971.227 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.251 kb on + strand, within Dsui_2800at 2971.441 kb on + strand, within Dsui_2800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
2,967,789 + Dsui_2798 0.51 -0.7
2,967,789 + Dsui_2798 0.51 -2.5
2,968,041 + Dsui_2798 0.72 -0.7
2,968,091 - Dsui_2798 0.76 -0.8
2,968,116 + Dsui_2798 0.78 -0.1
2,968,130 + Dsui_2798 0.79 -0.1
2,968,149 - +0.2
2,968,173 - Dsui_2798 0.83 -0.2
2,968,218 + Dsui_2798 0.87 -0.1
2,968,233 + Dsui_2798 0.88 +0.0
2,968,233 + Dsui_2798 0.88 +1.2
2,968,241 - -0.3
2,968,297 + +0.8
2,968,316 + +0.9
2,968,418 - +0.7
2,968,540 - -0.8
2,968,615 - -0.3
2,968,633 + -0.8
2,968,710 - Dsui_2799 0.11 -2.2
2,968,754 + -3.5
2,968,764 + -1.9
2,968,820 + -3.1
2,968,844 - Dsui_2799 0.18 -2.2
2,968,909 + -4.0
2,968,953 + Dsui_2799 0.23 -2.2
2,969,116 + -1.2
2,969,116 + Dsui_2799 0.31 -0.4
2,969,340 - Dsui_2799 0.42 -1.8
2,969,381 - Dsui_2799 0.44 +0.1
2,969,555 - Dsui_2799 0.53 +0.3
2,969,563 + -2.6
2,969,694 + -2.3
2,969,868 - Dsui_2799 0.68 -1.3
2,970,108 - Dsui_2799 0.80 -2.0
2,970,263 + -2.8
2,970,351 - -0.0
2,970,396 - -4.7
2,970,403 - -2.4
2,970,436 - -2.1
2,970,616 - -1.9
2,970,630 - -0.3
2,970,634 - -1.4
2,970,635 - -3.3
2,970,654 + Dsui_2800 0.10 -4.8
2,970,662 - -2.9
2,970,662 - Dsui_2800 0.11 -0.2
2,970,678 - Dsui_2800 0.12 -1.6
2,970,715 - Dsui_2800 0.15 +0.1
2,970,721 - Dsui_2800 0.15 -1.5
2,970,721 - Dsui_2800 0.15 -0.8
2,970,721 - Dsui_2800 0.15 -3.2
2,970,728 - -2.1
2,970,767 + -0.3
2,970,842 + Dsui_2800 0.23 -0.6
2,970,861 - Dsui_2800 0.25 -0.8
2,971,005 + Dsui_2800 0.35 -2.8
2,971,037 + -1.2
2,971,054 - Dsui_2800 0.38 -2.3
2,971,062 + Dsui_2800 0.39 -2.2
2,971,138 + -1.8
2,971,138 - Dsui_2800 0.44 -0.0
2,971,166 - Dsui_2800 0.46 -1.6
2,971,198 + Dsui_2800 0.48 -0.8
2,971,227 - Dsui_2800 0.50 -1.2
2,971,232 - Dsui_2800 0.50 -0.3
2,971,232 - Dsui_2800 0.50 -0.1
2,971,232 - Dsui_2800 0.50 -1.1
2,971,251 + Dsui_2800 0.52 -2.3
2,971,441 + Dsui_2800 0.65 -2.9

Or see this region's nucleotide sequence