Strain Fitness in Dechlorosoma suillum PS around Dsui_2782

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2781 and Dsui_2782 overlap by 4 nucleotidesDsui_2782 and Dsui_2783 are separated by 40 nucleotides Dsui_2781: Dsui_2781 - PAS domain S-box, at 2,945,260 to 2,949,126 _2781 Dsui_2782: Dsui_2782 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 2,949,123 to 2,950,247 _2782 Dsui_2783: Dsui_2783 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,950,288 to 2,951,418 _2783 Position (kb) 2949 2950 2951Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2948.789 kb on + strandat 2948.903 kb on + strandat 2949.114 kb on - strandat 2949.342 kb on - strandat 2949.696 kb on + strand, within Dsui_2782at 2949.721 kb on + strand, within Dsui_2782at 2949.778 kb on - strand, within Dsui_2782at 2950.142 kb on - strandat 2950.214 kb on - strandat 2950.403 kb on + strandat 2950.480 kb on - strand, within Dsui_2783at 2950.501 kb on - strand, within Dsui_2783at 2950.676 kb on + strandat 2951.153 kb on - strandat 2951.153 kb on - strand, within Dsui_2783at 2951.156 kb on - strand, within Dsui_2783at 2951.201 kb on - strand, within Dsui_2783

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
2,948,789 + -1.6
2,948,903 + -4.0
2,949,114 - +0.2
2,949,342 - -3.3
2,949,696 + Dsui_2782 0.51 -3.7
2,949,721 + Dsui_2782 0.53 +2.8
2,949,778 - Dsui_2782 0.58 -4.2
2,950,142 - -1.5
2,950,214 - -1.9
2,950,403 + -1.3
2,950,480 - Dsui_2783 0.17 -0.9
2,950,501 - Dsui_2783 0.19 +0.5
2,950,676 + -0.8
2,951,153 - -2.1
2,951,153 - Dsui_2783 0.76 -2.2
2,951,156 - Dsui_2783 0.77 -3.8
2,951,201 - Dsui_2783 0.81 -0.9

Or see this region's nucleotide sequence