Strain Fitness in Dechlorosoma suillum PS around Dsui_2435

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2434 and Dsui_2435 overlap by 4 nucleotidesDsui_2435 and Dsui_2436 are separated by 88 nucleotides Dsui_2434: Dsui_2434 - excinuclease ABC, B subunit, at 2,593,292 to 2,595,364 _2434 Dsui_2435: Dsui_2435 - protein-tyrosine-phosphatase, at 2,595,361 to 2,595,888 _2435 Dsui_2436: Dsui_2436 - ribonuclease, Rne/Rng family, at 2,595,977 to 2,598,739 _2436 Position (kb) 2595 2596Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2594.389 kb on + strand, within Dsui_2434at 2594.389 kb on + strand, within Dsui_2434at 2594.389 kb on + strand, within Dsui_2434at 2594.389 kb on + strand, within Dsui_2434at 2594.389 kb on + strand, within Dsui_2434at 2594.389 kb on + strand, within Dsui_2434at 2594.397 kb on - strandat 2594.397 kb on - strandat 2594.445 kb on + strand, within Dsui_2434at 2594.535 kb on + strand, within Dsui_2434at 2594.580 kb on + strand, within Dsui_2434at 2594.612 kb on + strand, within Dsui_2434at 2594.627 kb on + strand, within Dsui_2434at 2594.667 kb on + strand, within Dsui_2434at 2594.686 kb on + strand, within Dsui_2434at 2594.711 kb on + strand, within Dsui_2434at 2594.711 kb on + strand, within Dsui_2434at 2594.753 kb on - strand, within Dsui_2434at 2594.767 kb on + strand, within Dsui_2434at 2594.798 kb on - strand, within Dsui_2434at 2594.799 kb on - strand, within Dsui_2434at 2594.861 kb on + strand, within Dsui_2434at 2594.861 kb on + strand, within Dsui_2434at 2594.871 kb on + strand, within Dsui_2434at 2595.157 kb on + strandat 2595.161 kb on + strandat 2595.225 kb on - strandat 2595.260 kb on + strandat 2595.266 kb on + strandat 2595.312 kb on + strandat 2595.351 kb on + strandat 2595.361 kb on - strandat 2595.363 kb on + strandat 2595.388 kb on + strandat 2595.396 kb on - strandat 2595.518 kb on + strand, within Dsui_2435at 2595.556 kb on - strand, within Dsui_2435at 2595.556 kb on - strand, within Dsui_2435at 2595.620 kb on + strand, within Dsui_2435at 2595.680 kb on + strand, within Dsui_2435at 2595.680 kb on + strand, within Dsui_2435at 2595.748 kb on - strand, within Dsui_2435at 2595.769 kb on + strand, within Dsui_2435at 2595.779 kb on + strand, within Dsui_2435at 2595.859 kb on + strandat 2595.865 kb on + strandat 2595.882 kb on + strandat 2595.936 kb on + strandat 2595.944 kb on + strandat 2595.968 kb on + strandat 2596.027 kb on - strandat 2596.074 kb on + strandat 2596.098 kb on - strandat 2596.162 kb on - strandat 2596.206 kb on - strandat 2596.234 kb on - strandat 2596.253 kb on - strandat 2596.271 kb on - strand, within Dsui_2436at 2596.453 kb on + strand, within Dsui_2436at 2596.484 kb on - strand, within Dsui_2436at 2596.588 kb on - strand, within Dsui_2436at 2596.637 kb on + strand, within Dsui_2436at 2596.662 kb on + strandat 2596.718 kb on - strand, within Dsui_2436at 2596.754 kb on - strand, within Dsui_2436at 2596.754 kb on - strand, within Dsui_2436at 2596.769 kb on - strand, within Dsui_2436

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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2,594,389 + Dsui_2434 0.53 -1.1
2,594,389 + Dsui_2434 0.53 -1.6
2,594,389 + Dsui_2434 0.53 -1.1
2,594,389 + Dsui_2434 0.53 +0.1
2,594,389 + Dsui_2434 0.53 -1.3
2,594,389 + Dsui_2434 0.53 -1.7
2,594,397 - -2.0
2,594,397 - -2.1
2,594,445 + Dsui_2434 0.56 -0.7
2,594,535 + Dsui_2434 0.60 -0.5
2,594,580 + Dsui_2434 0.62 -3.7
2,594,612 + Dsui_2434 0.64 -0.8
2,594,627 + Dsui_2434 0.64 +1.0
2,594,667 + Dsui_2434 0.66 -1.3
2,594,686 + Dsui_2434 0.67 +2.6
2,594,711 + Dsui_2434 0.68 -1.2
2,594,711 + Dsui_2434 0.68 -0.5
2,594,753 - Dsui_2434 0.70 -3.8
2,594,767 + Dsui_2434 0.71 -1.6
2,594,798 - Dsui_2434 0.73 -3.7
2,594,799 - Dsui_2434 0.73 -3.9
2,594,861 + Dsui_2434 0.76 +0.4
2,594,861 + Dsui_2434 0.76 -3.3
2,594,871 + Dsui_2434 0.76 -0.2
2,595,157 + +0.5
2,595,161 + -0.2
2,595,225 - -0.7
2,595,260 + +0.2
2,595,266 + +1.6
2,595,312 + +2.2
2,595,351 + +1.0
2,595,361 - -0.5
2,595,363 + +0.8
2,595,388 + +0.8
2,595,396 - -0.4
2,595,518 + Dsui_2435 0.30 +0.2
2,595,556 - Dsui_2435 0.37 -0.5
2,595,556 - Dsui_2435 0.37 -0.4
2,595,620 + Dsui_2435 0.49 +1.0
2,595,680 + Dsui_2435 0.60 +0.8
2,595,680 + Dsui_2435 0.60 +0.8
2,595,748 - Dsui_2435 0.73 -2.9
2,595,769 + Dsui_2435 0.77 +0.7
2,595,779 + Dsui_2435 0.79 +0.9
2,595,859 + +1.5
2,595,865 + -0.0
2,595,882 + +2.2
2,595,936 + +0.2
2,595,944 + +0.8
2,595,968 + +0.8
2,596,027 - +0.5
2,596,074 + -1.1
2,596,098 - -0.1
2,596,162 - +0.6
2,596,206 - +0.6
2,596,234 - +1.0
2,596,253 - +1.0
2,596,271 - Dsui_2436 0.11 +0.7
2,596,453 + Dsui_2436 0.17 +0.6
2,596,484 - Dsui_2436 0.18 -0.8
2,596,588 - Dsui_2436 0.22 +2.9
2,596,637 + Dsui_2436 0.24 +0.1
2,596,662 + -0.9
2,596,718 - Dsui_2436 0.27 -0.5
2,596,754 - Dsui_2436 0.28 -1.0
2,596,754 - Dsui_2436 0.28 +0.0
2,596,769 - Dsui_2436 0.29 -1.0

Or see this region's nucleotide sequence