Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2411 and Dsui_2412 are separated by 125 nucleotides Dsui_2412 and Dsui_2413 are separated by 33 nucleotides
Dsui_2411: Dsui_2411 - alanine racemase, at 2,562,349 to 2,563,440
_2411
Dsui_2412: Dsui_2412 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,563,566 to 2,566,304
_2412
Dsui_2413: Dsui_2413 - DNA repair protein RadA, at 2,566,338 to 2,567,711
_2413
Position (kb)
2563
2564
2565
2566
2567 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2563.445 kb on + strand at 2563.622 kb on - strand at 2563.694 kb on + strand at 2563.923 kb on + strand, within Dsui_2412 at 2564.225 kb on + strand, within Dsui_2412 at 2564.281 kb on - strand, within Dsui_2412 at 2564.412 kb on + strand, within Dsui_2412 at 2564.415 kb on - strand at 2564.525 kb on + strand, within Dsui_2412 at 2564.674 kb on + strand, within Dsui_2412 at 2564.674 kb on + strand, within Dsui_2412 at 2564.674 kb on + strand, within Dsui_2412 at 2564.741 kb on + strand, within Dsui_2412 at 2564.749 kb on - strand at 2564.768 kb on + strand, within Dsui_2412 at 2564.776 kb on - strand at 2564.827 kb on + strand, within Dsui_2412 at 2564.827 kb on + strand, within Dsui_2412 at 2564.835 kb on - strand at 2565.018 kb on + strand, within Dsui_2412 at 2565.025 kb on + strand, within Dsui_2412 at 2565.040 kb on + strand, within Dsui_2412 at 2565.173 kb on + strand, within Dsui_2412 at 2565.206 kb on + strand, within Dsui_2412 at 2565.303 kb on + strand, within Dsui_2412 at 2565.352 kb on + strand, within Dsui_2412 at 2565.408 kb on + strand, within Dsui_2412 at 2565.424 kb on + strand at 2565.523 kb on + strand, within Dsui_2412 at 2565.597 kb on + strand at 2565.639 kb on + strand, within Dsui_2412 at 2565.670 kb on + strand, within Dsui_2412 at 2565.685 kb on + strand, within Dsui_2412 at 2565.686 kb on - strand at 2565.793 kb on + strand, within Dsui_2412 at 2565.815 kb on + strand, within Dsui_2412 at 2565.913 kb on + strand, within Dsui_2412 at 2565.913 kb on + strand, within Dsui_2412 at 2565.990 kb on - strand at 2566.170 kb on + strand at 2566.232 kb on + strand at 2566.326 kb on - strand at 2566.355 kb on + strand at 2566.436 kb on + strand at 2566.530 kb on + strand, within Dsui_2413 at 2566.558 kb on + strand, within Dsui_2413 at 2566.576 kb on - strand at 2566.591 kb on - strand at 2566.669 kb on + strand, within Dsui_2413 at 2566.908 kb on + strand, within Dsui_2413 at 2567.153 kb on + strand, within Dsui_2413 at 2567.200 kb on + strand, within Dsui_2413
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 2,563,445 + -0.2 2,563,622 - -0.7 2,563,694 + -1.0 2,563,923 + Dsui_2412 0.13 +0.4 2,564,225 + Dsui_2412 0.24 +1.1 2,564,281 - Dsui_2412 0.26 -3.7 2,564,412 + Dsui_2412 0.31 -0.8 2,564,415 - -1.5 2,564,525 + Dsui_2412 0.35 -0.4 2,564,674 + Dsui_2412 0.40 -0.3 2,564,674 + Dsui_2412 0.40 -1.0 2,564,674 + Dsui_2412 0.40 +2.7 2,564,741 + Dsui_2412 0.43 +0.0 2,564,749 - -2.7 2,564,768 + Dsui_2412 0.44 +0.3 2,564,776 - -0.3 2,564,827 + Dsui_2412 0.46 +0.5 2,564,827 + Dsui_2412 0.46 -0.2 2,564,835 - -1.5 2,565,018 + Dsui_2412 0.53 +0.4 2,565,025 + Dsui_2412 0.53 -0.7 2,565,040 + Dsui_2412 0.54 +1.2 2,565,173 + Dsui_2412 0.59 -0.6 2,565,206 + Dsui_2412 0.60 -2.9 2,565,303 + Dsui_2412 0.63 -1.6 2,565,352 + Dsui_2412 0.65 -0.2 2,565,408 + Dsui_2412 0.67 -1.8 2,565,424 + -2.1 2,565,523 + Dsui_2412 0.71 +1.0 2,565,597 + -2.9 2,565,639 + Dsui_2412 0.76 +0.8 2,565,670 + Dsui_2412 0.77 +0.6 2,565,685 + Dsui_2412 0.77 -0.7 2,565,686 - -1.1 2,565,793 + Dsui_2412 0.81 +0.5 2,565,815 + Dsui_2412 0.82 +0.2 2,565,913 + Dsui_2412 0.86 -0.6 2,565,913 + Dsui_2412 0.86 +0.1 2,565,990 - -1.7 2,566,170 + -0.7 2,566,232 + +1.1 2,566,326 - -0.3 2,566,355 + +0.1 2,566,436 + +0.2 2,566,530 + Dsui_2413 0.14 +0.3 2,566,558 + Dsui_2413 0.16 -0.2 2,566,576 - -2.1 2,566,591 - -2.1 2,566,669 + Dsui_2413 0.24 +0.3 2,566,908 + Dsui_2413 0.41 -0.0 2,567,153 + Dsui_2413 0.59 +0.7 2,567,200 + Dsui_2413 0.63 +0.2
Or see this region's nucleotide sequence