Strain Fitness in Dechlorosoma suillum PS around Dsui_2030

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2029 and Dsui_2030 are separated by 79 nucleotidesDsui_2030 and Dsui_2031 are separated by 423 nucleotidesDsui_2031 and Dsui_2032 are separated by 143 nucleotides Dsui_2029: Dsui_2029 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,147,645 to 2,148,565 _2029 Dsui_2030: Dsui_2030 - branched-chain amino acid aminotransferase, group I, at 2,148,645 to 2,149,571 _2030 Dsui_2031: Dsui_2031 - putative thioesterase, at 2,149,995 to 2,150,423 _2031 Dsui_2032: Dsui_2032 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,150,567 to 2,153,197 _2032 Position (kb) 2148 2149 2150Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2147.658 kb on - strandat 2147.710 kb on - strandat 2147.967 kb on - strand, within Dsui_2029at 2147.967 kb on - strand, within Dsui_2029at 2148.089 kb on - strand, within Dsui_2029at 2148.428 kb on + strandat 2148.535 kb on - strandat 2148.560 kb on + strandat 2148.560 kb on + strandat 2148.678 kb on + strandat 2148.690 kb on + strandat 2148.706 kb on + strandat 2148.746 kb on + strandat 2148.862 kb on - strandat 2148.908 kb on + strand, within Dsui_2030at 2148.955 kb on - strandat 2149.058 kb on + strandat 2149.098 kb on - strand, within Dsui_2030at 2149.098 kb on - strandat 2149.125 kb on - strandat 2149.189 kb on + strandat 2149.235 kb on + strand, within Dsui_2030at 2149.290 kb on + strandat 2149.290 kb on + strand, within Dsui_2030at 2149.312 kb on - strand, within Dsui_2030at 2149.326 kb on - strandat 2149.363 kb on + strandat 2149.495 kb on - strandat 2149.587 kb on - strandat 2149.656 kb on + strandat 2149.749 kb on - strandat 2149.911 kb on + strandat 2149.919 kb on - strandat 2149.941 kb on - strandat 2150.002 kb on + strandat 2150.030 kb on - strandat 2150.030 kb on - strandat 2150.044 kb on - strandat 2150.077 kb on + strandat 2150.085 kb on - strand, within Dsui_2031at 2150.093 kb on + strandat 2150.116 kb on - strand, within Dsui_2031at 2150.198 kb on - strand, within Dsui_2031at 2150.271 kb on - strand, within Dsui_2031at 2150.318 kb on + strandat 2150.385 kb on + strandat 2150.392 kb on - strandat 2150.400 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
2,147,658 - -0.6
2,147,710 - +0.6
2,147,967 - Dsui_2029 0.35 -4.8
2,147,967 - Dsui_2029 0.35 -0.1
2,148,089 - Dsui_2029 0.48 +1.9
2,148,428 + +1.5
2,148,535 - +0.9
2,148,560 + -3.6
2,148,560 + -3.4
2,148,678 + -0.8
2,148,690 + -0.5
2,148,706 + -1.5
2,148,746 + +0.4
2,148,862 - +0.1
2,148,908 + Dsui_2030 0.28 +0.3
2,148,955 - +0.9
2,149,058 + -2.0
2,149,098 - Dsui_2030 0.49 -2.4
2,149,098 - -2.4
2,149,125 - -0.7
2,149,189 + -2.0
2,149,235 + Dsui_2030 0.64 -0.7
2,149,290 + -2.1
2,149,290 + Dsui_2030 0.70 -0.1
2,149,312 - Dsui_2030 0.72 -3.1
2,149,326 - -0.1
2,149,363 + -1.5
2,149,495 - -3.6
2,149,587 - -0.7
2,149,656 + -1.2
2,149,749 - +0.8
2,149,911 + -2.3
2,149,919 - +0.7
2,149,941 - +0.4
2,150,002 + -0.1
2,150,030 - -1.3
2,150,030 - -2.3
2,150,044 - -0.3
2,150,077 + -1.9
2,150,085 - Dsui_2031 0.21 +1.1
2,150,093 + -0.9
2,150,116 - Dsui_2031 0.28 +0.6
2,150,198 - Dsui_2031 0.47 +0.5
2,150,271 - Dsui_2031 0.64 +0.7
2,150,318 + -1.1
2,150,385 + -2.1
2,150,392 - -1.9
2,150,400 - +0.4

Or see this region's nucleotide sequence