Strain Fitness in Dechlorosoma suillum PS around Dsui_1811

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1809 and Dsui_1810 are separated by 15 nucleotidesDsui_1810 and Dsui_1811 overlap by 1 nucleotidesDsui_1811 and Dsui_1812 are separated by 209 nucleotidesDsui_1812 and Dsui_1813 are separated by 3 nucleotides Dsui_1809: Dsui_1809 - DNA polymerase III, subunit gamma/tau, at 1,906,920 to 1,908,566 _1809 Dsui_1810: Dsui_1810 - DNA-binding protein, YbaB/EbfC family, at 1,908,582 to 1,908,905 _1810 Dsui_1811: Dsui_1811 - recombination protein RecR, at 1,908,905 to 1,909,507 _1811 Dsui_1812: Dsui_1812 - ubiquinol-cytochrome c reductase, iron-sulfur subunit, at 1,909,717 to 1,910,313 _1812 Dsui_1813: Dsui_1813 - cytochrome b subunit of the bc complex, at 1,910,317 to 1,911,621 _1813 Position (kb) 1908 1909 1910Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1908.608 kb on + strandat 1908.645 kb on - strandat 1908.647 kb on + strand, within Dsui_1810at 1908.657 kb on + strand, within Dsui_1810at 1908.657 kb on + strand, within Dsui_1810at 1908.683 kb on - strand, within Dsui_1810at 1908.841 kb on - strand, within Dsui_1810at 1908.868 kb on + strand, within Dsui_1810at 1908.868 kb on + strand, within Dsui_1810at 1908.876 kb on - strandat 1908.904 kb on - strandat 1908.934 kb on + strandat 1908.942 kb on - strandat 1908.982 kb on + strand, within Dsui_1811at 1909.089 kb on - strand, within Dsui_1811at 1909.097 kb on - strand, within Dsui_1811at 1909.097 kb on - strand, within Dsui_1811at 1909.192 kb on + strand, within Dsui_1811at 1909.195 kb on - strand, within Dsui_1811at 1909.223 kb on + strand, within Dsui_1811at 1909.474 kb on + strandat 1909.476 kb on - strandat 1909.539 kb on + strandat 1909.541 kb on - strandat 1909.611 kb on + strandat 1909.662 kb on + strandat 1910.296 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,908,608 + +0.8
1,908,645 - -1.3
1,908,647 + Dsui_1810 0.20 -0.0
1,908,657 + Dsui_1810 0.23 -4.6
1,908,657 + Dsui_1810 0.23 +0.7
1,908,683 - Dsui_1810 0.31 -2.4
1,908,841 - Dsui_1810 0.80 -1.7
1,908,868 + Dsui_1810 0.88 +0.0
1,908,868 + Dsui_1810 0.88 -0.5
1,908,876 - -2.1
1,908,904 - -2.9
1,908,934 + +0.5
1,908,942 - +0.0
1,908,982 + Dsui_1811 0.13 +0.4
1,909,089 - Dsui_1811 0.31 -1.6
1,909,097 - Dsui_1811 0.32 -2.3
1,909,097 - Dsui_1811 0.32 -1.8
1,909,192 + Dsui_1811 0.48 +1.0
1,909,195 - Dsui_1811 0.48 -2.1
1,909,223 + Dsui_1811 0.53 +1.0
1,909,474 + +0.7
1,909,476 - +1.3
1,909,539 + +0.3
1,909,541 - +0.5
1,909,611 + +0.6
1,909,662 + +0.8
1,910,296 + -2.0

Or see this region's nucleotide sequence