Strain Fitness in Dechlorosoma suillum PS around Dsui_1746

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1744 and Dsui_1745 overlap by 4 nucleotidesDsui_1745 and Dsui_1746 overlap by 4 nucleotidesDsui_1746 and Dsui_1747 overlap by 4 nucleotidesDsui_1747 and Dsui_1748 are separated by 202 nucleotides Dsui_1744: Dsui_1744 - flagellar biosynthetic protein FliR, at 1,833,058 to 1,833,843 _1744 Dsui_1745: Dsui_1745 - flagellar biosynthetic protein FliQ, at 1,833,840 to 1,834,109 _1745 Dsui_1746: Dsui_1746 - flagellar biosynthetic protein FliP, at 1,834,106 to 1,834,858 _1746 Dsui_1747: Dsui_1747 - flagellar biosynthetic protein FliO, at 1,834,855 to 1,835,253 _1747 Dsui_1748: Dsui_1748 - flagellar motor switch protein FliN, at 1,835,456 to 1,835,893 _1748 Position (kb) 1834 1835Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1833.134 kb on + strandat 1833.134 kb on + strandat 1833.134 kb on + strandat 1833.139 kb on + strand, within Dsui_1744at 1833.142 kb on - strand, within Dsui_1744at 1833.158 kb on - strand, within Dsui_1744at 1833.165 kb on + strand, within Dsui_1744at 1833.165 kb on + strand, within Dsui_1744at 1833.173 kb on - strand, within Dsui_1744at 1833.240 kb on + strand, within Dsui_1744at 1833.285 kb on + strand, within Dsui_1744at 1833.296 kb on + strand, within Dsui_1744at 1833.306 kb on + strand, within Dsui_1744at 1833.325 kb on - strand, within Dsui_1744at 1833.339 kb on + strandat 1833.347 kb on - strand, within Dsui_1744at 1833.383 kb on + strand, within Dsui_1744at 1833.391 kb on - strand, within Dsui_1744at 1833.444 kb on + strand, within Dsui_1744at 1833.452 kb on - strand, within Dsui_1744at 1833.583 kb on - strand, within Dsui_1744at 1833.639 kb on - strand, within Dsui_1744at 1833.646 kb on - strand, within Dsui_1744at 1833.663 kb on + strand, within Dsui_1744at 1833.827 kb on + strandat 1833.828 kb on + strandat 1833.897 kb on - strand, within Dsui_1745at 1833.965 kb on + strand, within Dsui_1745at 1834.037 kb on + strand, within Dsui_1745at 1834.064 kb on + strand, within Dsui_1745at 1834.160 kb on - strandat 1834.179 kb on - strandat 1834.345 kb on + strand, within Dsui_1746at 1834.353 kb on - strand, within Dsui_1746at 1834.515 kb on + strand, within Dsui_1746at 1834.515 kb on + strand, within Dsui_1746at 1834.515 kb on + strand, within Dsui_1746at 1834.523 kb on - strand, within Dsui_1746at 1834.523 kb on - strand, within Dsui_1746at 1834.523 kb on - strand, within Dsui_1746at 1834.726 kb on + strand, within Dsui_1746at 1834.728 kb on + strand, within Dsui_1746at 1834.734 kb on - strand, within Dsui_1746at 1834.736 kb on - strand, within Dsui_1746at 1834.785 kb on + strandat 1834.785 kb on + strandat 1834.789 kb on + strandat 1834.888 kb on - strandat 1834.916 kb on + strand, within Dsui_1747at 1834.937 kb on + strand, within Dsui_1747at 1834.945 kb on - strand, within Dsui_1747at 1834.971 kb on - strand, within Dsui_1747at 1835.096 kb on - strand, within Dsui_1747at 1835.173 kb on + strand, within Dsui_1747at 1835.188 kb on + strand, within Dsui_1747at 1835.208 kb on - strand, within Dsui_1747at 1835.222 kb on + strandat 1835.232 kb on + strandat 1835.304 kb on - strandat 1835.359 kb on + strandat 1835.372 kb on + strandat 1835.372 kb on + strandat 1835.372 kb on + strandat 1835.380 kb on - strandat 1835.567 kb on + strand, within Dsui_1748at 1835.576 kb on + strand, within Dsui_1748at 1835.621 kb on - strand, within Dsui_1748at 1835.663 kb on + strand, within Dsui_1748at 1835.693 kb on + strand, within Dsui_1748at 1835.693 kb on - strand, within Dsui_1748at 1835.734 kb on - strand, within Dsui_1748

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
remove
1,833,134 + -0.8
1,833,134 + +1.0
1,833,134 + +0.0
1,833,139 + Dsui_1744 0.10 +1.6
1,833,142 - Dsui_1744 0.11 -4.4
1,833,158 - Dsui_1744 0.13 +1.3
1,833,165 + Dsui_1744 0.14 -1.9
1,833,165 + Dsui_1744 0.14 +1.0
1,833,173 - Dsui_1744 0.15 +0.9
1,833,240 + Dsui_1744 0.23 +0.0
1,833,285 + Dsui_1744 0.29 +0.4
1,833,296 + Dsui_1744 0.30 -0.3
1,833,306 + Dsui_1744 0.32 +0.5
1,833,325 - Dsui_1744 0.34 +0.4
1,833,339 + -0.9
1,833,347 - Dsui_1744 0.37 +0.7
1,833,383 + Dsui_1744 0.41 +1.2
1,833,391 - Dsui_1744 0.42 +0.8
1,833,444 + Dsui_1744 0.49 -0.0
1,833,452 - Dsui_1744 0.50 +0.6
1,833,583 - Dsui_1744 0.67 +0.9
1,833,639 - Dsui_1744 0.74 +1.2
1,833,646 - Dsui_1744 0.75 +1.2
1,833,663 + Dsui_1744 0.77 +0.4
1,833,827 + -0.4
1,833,828 + +1.1
1,833,897 - Dsui_1745 0.21 +0.7
1,833,965 + Dsui_1745 0.46 -0.8
1,834,037 + Dsui_1745 0.73 +0.3
1,834,064 + Dsui_1745 0.83 +0.2
1,834,160 - +1.4
1,834,179 - +1.0
1,834,345 + Dsui_1746 0.32 -0.1
1,834,353 - Dsui_1746 0.33 +1.0
1,834,515 + Dsui_1746 0.54 +1.3
1,834,515 + Dsui_1746 0.54 +1.2
1,834,515 + Dsui_1746 0.54 -0.7
1,834,523 - Dsui_1746 0.55 +1.5
1,834,523 - Dsui_1746 0.55 +0.6
1,834,523 - Dsui_1746 0.55 +0.7
1,834,726 + Dsui_1746 0.82 -0.7
1,834,728 + Dsui_1746 0.83 -1.3
1,834,734 - Dsui_1746 0.83 +0.9
1,834,736 - Dsui_1746 0.84 +1.0
1,834,785 + +0.8
1,834,785 + -0.9
1,834,789 + -0.9
1,834,888 - -0.1
1,834,916 + Dsui_1747 0.15 -1.2
1,834,937 + Dsui_1747 0.21 -0.2
1,834,945 - Dsui_1747 0.23 +1.1
1,834,971 - Dsui_1747 0.29 +0.8
1,835,096 - Dsui_1747 0.60 +0.1
1,835,173 + Dsui_1747 0.80 +1.1
1,835,188 + Dsui_1747 0.83 -1.6
1,835,208 - Dsui_1747 0.88 +2.3
1,835,222 + -0.6
1,835,232 + -3.7
1,835,304 - +0.5
1,835,359 + +0.0
1,835,372 + -1.3
1,835,372 + +0.8
1,835,372 + -1.2
1,835,380 - +0.1
1,835,567 + Dsui_1748 0.25 -0.7
1,835,576 + Dsui_1748 0.27 +0.3
1,835,621 - Dsui_1748 0.38 +0.7
1,835,663 + Dsui_1748 0.47 -0.9
1,835,693 + Dsui_1748 0.54 -0.3
1,835,693 - Dsui_1748 0.54 +1.1
1,835,734 - Dsui_1748 0.63 +0.9

Or see this region's nucleotide sequence