Strain Fitness in Dechlorosoma suillum PS around Dsui_1665

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1663 and Dsui_1664 are separated by 101 nucleotidesDsui_1664 and Dsui_1665 are separated by 33 nucleotidesDsui_1665 and Dsui_1666 overlap by 16 nucleotidesDsui_1666 and Dsui_1667 are separated by 79 nucleotides Dsui_1663: Dsui_1663 - ABC-type Co2+ transport system, periplasmic component, at 1,747,425 to 1,748,228 _1663 Dsui_1664: Dsui_1664 - putative periplasmic protein, at 1,748,330 to 1,748,854 _1664 Dsui_1665: Dsui_1665 - hypothetical protein, at 1,748,888 to 1,749,547 _1665 Dsui_1666: Dsui_1666 - putative iron-regulated protein, at 1,749,532 to 1,750,212 _1666 Dsui_1667: Dsui_1667 - TonB-dependent siderophore receptor, at 1,750,292 to 1,752,595 _1667 Position (kb) 1748 1749 1750Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1747.892 kb on + strand, within Dsui_1663at 1747.900 kb on - strand, within Dsui_1663at 1747.939 kb on + strand, within Dsui_1663at 1747.947 kb on - strand, within Dsui_1663at 1748.093 kb on - strand, within Dsui_1663at 1748.116 kb on + strandat 1748.116 kb on + strandat 1748.116 kb on + strand, within Dsui_1663at 1748.276 kb on - strandat 1748.289 kb on + strandat 1748.290 kb on - strandat 1748.290 kb on - strandat 1748.290 kb on - strandat 1748.290 kb on - strandat 1748.328 kb on + strandat 1748.336 kb on - strandat 1748.341 kb on + strandat 1748.349 kb on - strandat 1748.371 kb on + strandat 1748.439 kb on - strand, within Dsui_1664at 1748.439 kb on - strand, within Dsui_1664at 1748.550 kb on - strand, within Dsui_1664at 1748.564 kb on + strand, within Dsui_1664at 1748.661 kb on + strandat 1748.735 kb on - strand, within Dsui_1664at 1748.906 kb on + strandat 1748.935 kb on + strandat 1748.949 kb on - strandat 1749.069 kb on + strand, within Dsui_1665at 1749.077 kb on - strand, within Dsui_1665at 1749.154 kb on + strand, within Dsui_1665at 1749.185 kb on - strand, within Dsui_1665at 1749.358 kb on - strand, within Dsui_1665at 1749.513 kb on + strandat 1749.530 kb on + strandat 1749.538 kb on - strandat 1749.538 kb on - strandat 1750.221 kb on + strandat 1750.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,747,892 + Dsui_1663 0.58 -0.7
1,747,900 - Dsui_1663 0.59 -0.1
1,747,939 + Dsui_1663 0.64 -0.0
1,747,947 - Dsui_1663 0.65 +0.6
1,748,093 - Dsui_1663 0.83 +0.1
1,748,116 + +0.1
1,748,116 + -2.4
1,748,116 + Dsui_1663 0.86 -1.3
1,748,276 - +0.4
1,748,289 + -1.4
1,748,290 - +0.8
1,748,290 - -1.0
1,748,290 - +0.9
1,748,290 - +0.1
1,748,328 + -0.8
1,748,336 - -0.0
1,748,341 + -1.2
1,748,349 - +0.9
1,748,371 + -2.6
1,748,439 - Dsui_1664 0.21 +0.4
1,748,439 - Dsui_1664 0.21 +0.6
1,748,550 - Dsui_1664 0.42 +0.2
1,748,564 + Dsui_1664 0.45 -1.3
1,748,661 + -2.0
1,748,735 - Dsui_1664 0.77 +0.9
1,748,906 + -4.3
1,748,935 + +0.8
1,748,949 - +0.8
1,749,069 + Dsui_1665 0.27 -1.5
1,749,077 - Dsui_1665 0.29 +0.4
1,749,154 + Dsui_1665 0.40 -0.8
1,749,185 - Dsui_1665 0.45 +0.3
1,749,358 - Dsui_1665 0.71 -0.4
1,749,513 + -0.6
1,749,530 + -1.1
1,749,538 - +0.3
1,749,538 - +0.6
1,750,221 + -0.2
1,750,235 + -0.8

Or see this region's nucleotide sequence