Strain Fitness in Dechlorosoma suillum PS around Dsui_1622

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1620 and Dsui_1621 are separated by 146 nucleotidesDsui_1621 and Dsui_1622 are separated by 10 nucleotidesDsui_1622 and Dsui_1623 are separated by 220 nucleotidesDsui_1623 and Dsui_1624 are separated by 152 nucleotides Dsui_1620: Dsui_1620 - PAP2 (acid phosphatase) superfamily protein, at 1,702,647 to 1,703,414 _1620 Dsui_1621: Dsui_1621 - diacylglycerol kinase, at 1,703,561 to 1,703,932 _1621 Dsui_1622: Dsui_1622 - excinuclease ABC, A subunit, at 1,703,943 to 1,706,762 _1622 Dsui_1623: Dsui_1623 - tRNA-Thr, at 1,706,983 to 1,707,058 _1623 Dsui_1624: Dsui_1624 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 1,707,211 to 1,707,978 _1624 Position (kb) 1703 1704 1705 1706 1707Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1703.128 kb on - strand, within Dsui_1620at 1703.177 kb on + strand, within Dsui_1620at 1703.220 kb on + strand, within Dsui_1620at 1703.226 kb on + strand, within Dsui_1620at 1703.338 kb on + strandat 1703.362 kb on + strandat 1703.416 kb on - strandat 1703.634 kb on + strand, within Dsui_1621at 1703.661 kb on - strand, within Dsui_1621at 1703.851 kb on + strandat 1703.957 kb on - strandat 1703.992 kb on + strandat 1704.092 kb on + strandat 1704.092 kb on + strandat 1704.116 kb on + strandat 1704.121 kb on + strandat 1704.193 kb on - strandat 1704.242 kb on + strand, within Dsui_1622at 1704.242 kb on + strand, within Dsui_1622at 1704.299 kb on + strand, within Dsui_1622at 1704.299 kb on + strand, within Dsui_1622at 1704.313 kb on - strand, within Dsui_1622at 1704.389 kb on + strand, within Dsui_1622at 1704.392 kb on - strand, within Dsui_1622at 1704.464 kb on - strand, within Dsui_1622at 1704.651 kb on - strand, within Dsui_1622at 1704.651 kb on - strand, within Dsui_1622at 1704.656 kb on - strand, within Dsui_1622at 1704.705 kb on - strand, within Dsui_1622at 1704.717 kb on - strand, within Dsui_1622at 1704.802 kb on + strand, within Dsui_1622at 1704.802 kb on + strandat 1704.832 kb on - strand, within Dsui_1622at 1704.993 kb on - strand, within Dsui_1622at 1705.047 kb on - strand, within Dsui_1622at 1705.073 kb on - strand, within Dsui_1622at 1705.180 kb on + strand, within Dsui_1622at 1705.254 kb on - strand, within Dsui_1622at 1705.269 kb on - strand, within Dsui_1622at 1705.341 kb on + strand, within Dsui_1622at 1705.443 kb on - strand, within Dsui_1622at 1705.575 kb on + strand, within Dsui_1622at 1705.600 kb on - strand, within Dsui_1622at 1705.728 kb on - strand, within Dsui_1622at 1705.728 kb on - strand, within Dsui_1622at 1705.842 kb on + strandat 1705.869 kb on - strand, within Dsui_1622at 1705.916 kb on + strand, within Dsui_1622at 1705.916 kb on + strand, within Dsui_1622at 1705.932 kb on - strand, within Dsui_1622at 1705.944 kb on - strand, within Dsui_1622at 1706.002 kb on - strand, within Dsui_1622at 1706.146 kb on - strand, within Dsui_1622at 1706.148 kb on + strand, within Dsui_1622at 1706.156 kb on - strand, within Dsui_1622at 1706.167 kb on - strand, within Dsui_1622at 1706.187 kb on - strand, within Dsui_1622at 1706.255 kb on + strand, within Dsui_1622at 1706.421 kb on - strand, within Dsui_1622at 1706.473 kb on + strand, within Dsui_1622at 1706.702 kb on + strandat 1706.731 kb on - strandat 1706.731 kb on - strandat 1706.731 kb on - strandat 1706.776 kb on - strandat 1706.776 kb on - strandat 1706.788 kb on - strandat 1706.809 kb on + strandat 1706.953 kb on + strandat 1707.077 kb on + strandat 1707.080 kb on + strandat 1707.088 kb on - strandat 1707.199 kb on + strandat 1707.207 kb on - strandat 1707.217 kb on + strandat 1707.321 kb on + strand, within Dsui_1624at 1707.388 kb on - strandat 1707.394 kb on + strand, within Dsui_1624at 1707.407 kb on - strand, within Dsui_1624at 1707.498 kb on + strand, within Dsui_1624at 1707.501 kb on - strandat 1707.530 kb on + strand, within Dsui_1624at 1707.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,703,128 - Dsui_1620 0.63 -3.0
1,703,177 + Dsui_1620 0.69 -0.5
1,703,220 + Dsui_1620 0.75 -1.3
1,703,226 + Dsui_1620 0.75 +0.1
1,703,338 + -1.2
1,703,362 + -1.2
1,703,416 - +0.4
1,703,634 + Dsui_1621 0.20 -2.6
1,703,661 - Dsui_1621 0.27 +0.0
1,703,851 + -2.9
1,703,957 - -0.0
1,703,992 + -1.5
1,704,092 + -2.7
1,704,092 + -0.6
1,704,116 + -1.6
1,704,121 + -0.8
1,704,193 - +1.9
1,704,242 + Dsui_1622 0.11 -1.6
1,704,242 + Dsui_1622 0.11 +0.6
1,704,299 + Dsui_1622 0.13 -3.6
1,704,299 + Dsui_1622 0.13 -0.8
1,704,313 - Dsui_1622 0.13 +0.4
1,704,389 + Dsui_1622 0.16 -3.3
1,704,392 - Dsui_1622 0.16 -2.0
1,704,464 - Dsui_1622 0.18 -1.0
1,704,651 - Dsui_1622 0.25 +0.2
1,704,651 - Dsui_1622 0.25 -0.6
1,704,656 - Dsui_1622 0.25 -0.8
1,704,705 - Dsui_1622 0.27 +0.4
1,704,717 - Dsui_1622 0.27 -0.9
1,704,802 + Dsui_1622 0.30 -1.0
1,704,802 + -2.4
1,704,832 - Dsui_1622 0.32 -0.1
1,704,993 - Dsui_1622 0.37 -0.1
1,705,047 - Dsui_1622 0.39 +0.2
1,705,073 - Dsui_1622 0.40 -0.1
1,705,180 + Dsui_1622 0.44 -2.1
1,705,254 - Dsui_1622 0.46 -4.0
1,705,269 - Dsui_1622 0.47 -0.3
1,705,341 + Dsui_1622 0.50 -0.1
1,705,443 - Dsui_1622 0.53 -2.6
1,705,575 + Dsui_1622 0.58 -2.5
1,705,600 - Dsui_1622 0.59 +0.4
1,705,728 - Dsui_1622 0.63 -2.2
1,705,728 - Dsui_1622 0.63 +0.7
1,705,842 + -2.7
1,705,869 - Dsui_1622 0.68 -0.9
1,705,916 + Dsui_1622 0.70 -2.0
1,705,916 + Dsui_1622 0.70 -0.9
1,705,932 - Dsui_1622 0.71 -0.3
1,705,944 - Dsui_1622 0.71 +2.3
1,706,002 - Dsui_1622 0.73 +0.8
1,706,146 - Dsui_1622 0.78 -2.8
1,706,148 + Dsui_1622 0.78 -2.0
1,706,156 - Dsui_1622 0.78 -1.8
1,706,167 - Dsui_1622 0.79 -0.3
1,706,187 - Dsui_1622 0.80 +0.3
1,706,255 + Dsui_1622 0.82 -1.2
1,706,421 - Dsui_1622 0.88 -0.1
1,706,473 + Dsui_1622 0.90 -0.9
1,706,702 + -0.9
1,706,731 - -0.7
1,706,731 - +0.3
1,706,731 - -0.9
1,706,776 - +0.5
1,706,776 - -0.0
1,706,788 - -0.2
1,706,809 + +1.2
1,706,953 + +0.4
1,707,077 + -0.4
1,707,080 + -0.0
1,707,088 - +1.1
1,707,199 + +1.9
1,707,207 - -2.3
1,707,217 + +1.7
1,707,321 + Dsui_1624 0.14 +0.9
1,707,388 - -2.9
1,707,394 + Dsui_1624 0.24 +1.4
1,707,407 - Dsui_1624 0.26 -0.9
1,707,498 + Dsui_1624 0.37 -0.8
1,707,501 - -1.4
1,707,530 + Dsui_1624 0.42 -0.7
1,707,571 - -3.1

Or see this region's nucleotide sequence