Strain Fitness in Dechlorosoma suillum PS around Dsui_1055

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1054 and Dsui_1055 are separated by 31 nucleotidesDsui_1055 and Dsui_1056 are separated by 1 nucleotidesDsui_1056 and Dsui_1057 are separated by 146 nucleotides Dsui_1054: Dsui_1054 - pyridoxal-phosphate dependent TrpB-like enzyme, at 1,087,419 to 1,088,783 _1054 Dsui_1055: Dsui_1055 - sporulation related protein, at 1,088,815 to 1,089,660 _1055 Dsui_1056: Dsui_1056 - dephospho-CoA kinase, at 1,089,662 to 1,090,279 _1056 Dsui_1057: Dsui_1057 - hypothetical protein, at 1,090,426 to 1,091,178 _1057 Position (kb) 1088 1089 1090Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1087.891 kb on - strand, within Dsui_1054at 1087.906 kb on - strand, within Dsui_1054at 1087.943 kb on - strand, within Dsui_1054at 1087.948 kb on - strandat 1088.092 kb on + strand, within Dsui_1054at 1088.110 kb on + strand, within Dsui_1054at 1088.110 kb on + strand, within Dsui_1054at 1088.121 kb on - strand, within Dsui_1054at 1088.142 kb on - strandat 1088.316 kb on - strand, within Dsui_1054at 1088.327 kb on - strand, within Dsui_1054at 1088.367 kb on - strand, within Dsui_1054at 1088.384 kb on + strand, within Dsui_1054at 1088.392 kb on - strand, within Dsui_1054at 1088.405 kb on - strand, within Dsui_1054at 1088.636 kb on + strand, within Dsui_1054at 1088.644 kb on - strand, within Dsui_1054at 1088.644 kb on - strand, within Dsui_1054at 1088.649 kb on - strandat 1088.713 kb on + strandat 1088.755 kb on + strandat 1088.755 kb on + strandat 1089.162 kb on + strand, within Dsui_1055at 1089.255 kb on + strand, within Dsui_1055at 1089.383 kb on + strand, within Dsui_1055at 1089.472 kb on - strand, within Dsui_1055at 1089.492 kb on + strand, within Dsui_1055at 1089.492 kb on + strand, within Dsui_1055at 1089.500 kb on - strand, within Dsui_1055at 1089.630 kb on - strandat 1089.649 kb on + strandat 1089.654 kb on + strandat 1090.308 kb on + strandat 1090.309 kb on - strandat 1090.316 kb on - strandat 1090.324 kb on - strandat 1090.339 kb on + strandat 1090.403 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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1,087,891 - Dsui_1054 0.35 -2.4
1,087,906 - Dsui_1054 0.36 -2.3
1,087,943 - Dsui_1054 0.38 +0.5
1,087,948 - +0.7
1,088,092 + Dsui_1054 0.49 +0.4
1,088,110 + Dsui_1054 0.51 -1.0
1,088,110 + Dsui_1054 0.51 +0.1
1,088,121 - Dsui_1054 0.51 -4.1
1,088,142 - -0.2
1,088,316 - Dsui_1054 0.66 -1.9
1,088,327 - Dsui_1054 0.67 -0.0
1,088,367 - Dsui_1054 0.69 -1.6
1,088,384 + Dsui_1054 0.71 +0.5
1,088,392 - Dsui_1054 0.71 -1.2
1,088,405 - Dsui_1054 0.72 -5.3
1,088,636 + Dsui_1054 0.89 +0.5
1,088,644 - Dsui_1054 0.90 -2.3
1,088,644 - Dsui_1054 0.90 -1.3
1,088,649 - +0.5
1,088,713 + +0.5
1,088,755 + +0.6
1,088,755 + +0.4
1,089,162 + Dsui_1055 0.41 +0.3
1,089,255 + Dsui_1055 0.52 +0.6
1,089,383 + Dsui_1055 0.67 +0.1
1,089,472 - Dsui_1055 0.78 -2.8
1,089,492 + Dsui_1055 0.80 -5.4
1,089,492 + Dsui_1055 0.80 +0.4
1,089,500 - Dsui_1055 0.81 -3.4
1,089,630 - -3.0
1,089,649 + +0.6
1,089,654 + -0.0
1,090,308 + +0.2
1,090,309 - -0.1
1,090,316 - -0.5
1,090,324 - -4.5
1,090,339 + +0.2
1,090,403 + -0.7

Or see this region's nucleotide sequence