Strain Fitness in Dechlorosoma suillum PS around Dsui_0822

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0821 and Dsui_0822 are separated by 89 nucleotidesDsui_0822 and Dsui_0823 are separated by 114 nucleotides Dsui_0821: Dsui_0821 - DNA topoisomerase III, at 832,156 to 834,741 _0821 Dsui_0822: Dsui_0822 - DNA-binding ferritin-like protein (oxidative damage protectant), at 834,831 to 835,307 _0822 Dsui_0823: Dsui_0823 - transcriptional regulator, at 835,422 to 836,333 _0823 Position (kb) 834 835 836Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 834.636 kb on + strandat 834.639 kb on - strandat 834.678 kb on + strandat 834.678 kb on + strandat 834.708 kb on + strandat 834.720 kb on + strandat 834.736 kb on + strandat 834.743 kb on - strandat 834.764 kb on - strandat 834.770 kb on + strandat 834.775 kb on + strandat 834.778 kb on - strandat 834.778 kb on - strandat 834.779 kb on - strandat 834.785 kb on - strandat 834.785 kb on - strandat 834.854 kb on + strandat 834.854 kb on + strandat 834.856 kb on + strandat 834.858 kb on - strandat 834.862 kb on - strandat 834.886 kb on - strand, within Dsui_0822at 834.935 kb on - strand, within Dsui_0822at 834.935 kb on - strand, within Dsui_0822at 834.950 kb on - strand, within Dsui_0822at 834.967 kb on + strand, within Dsui_0822at 835.007 kb on - strand, within Dsui_0822at 835.046 kb on - strand, within Dsui_0822at 835.073 kb on - strand, within Dsui_0822at 835.083 kb on - strand, within Dsui_0822at 835.109 kb on + strand, within Dsui_0822at 835.109 kb on + strand, within Dsui_0822at 835.117 kb on - strand, within Dsui_0822at 835.117 kb on - strand, within Dsui_0822at 835.118 kb on - strand, within Dsui_0822at 835.127 kb on - strand, within Dsui_0822at 835.153 kb on - strand, within Dsui_0822at 835.161 kb on - strand, within Dsui_0822at 835.162 kb on + strand, within Dsui_0822at 835.170 kb on - strand, within Dsui_0822at 835.217 kb on + strand, within Dsui_0822at 835.217 kb on + strand, within Dsui_0822at 835.219 kb on + strand, within Dsui_0822at 835.219 kb on - strand, within Dsui_0822at 835.241 kb on + strand, within Dsui_0822at 835.249 kb on - strand, within Dsui_0822at 835.317 kb on + strandat 835.318 kb on - strandat 835.318 kb on - strandat 835.325 kb on - strandat 835.326 kb on - strandat 835.360 kb on - strandat 835.414 kb on - strandat 835.420 kb on + strandat 835.422 kb on + strandat 835.430 kb on + strandat 835.430 kb on + strandat 835.430 kb on - strandat 835.430 kb on - strandat 835.430 kb on - strandat 835.432 kb on - strandat 835.438 kb on - strandat 835.438 kb on - strandat 835.438 kb on - strandat 835.438 kb on - strandat 835.483 kb on + strandat 835.491 kb on - strandat 835.515 kb on - strand, within Dsui_0823at 835.515 kb on - strand, within Dsui_0823at 835.520 kb on - strand, within Dsui_0823at 835.573 kb on - strand, within Dsui_0823at 835.590 kb on + strand, within Dsui_0823at 835.637 kb on + strand, within Dsui_0823at 835.651 kb on + strand, within Dsui_0823at 835.670 kb on + strand, within Dsui_0823at 835.688 kb on - strand, within Dsui_0823at 835.703 kb on + strand, within Dsui_0823at 835.703 kb on + strand, within Dsui_0823at 835.706 kb on - strand, within Dsui_0823at 835.717 kb on + strand, within Dsui_0823at 835.725 kb on - strand, within Dsui_0823at 835.738 kb on + strand, within Dsui_0823at 835.740 kb on - strand, within Dsui_0823at 835.744 kb on + strand, within Dsui_0823at 835.757 kb on - strand, within Dsui_0823at 835.807 kb on + strand, within Dsui_0823at 835.815 kb on - strand, within Dsui_0823at 835.815 kb on - strand, within Dsui_0823at 835.815 kb on - strand, within Dsui_0823at 835.815 kb on - strand, within Dsui_0823at 835.815 kb on - strand, within Dsui_0823at 835.848 kb on + strand, within Dsui_0823at 835.848 kb on + strand, within Dsui_0823at 835.871 kb on - strand, within Dsui_0823at 835.915 kb on - strand, within Dsui_0823at 835.930 kb on + strand, within Dsui_0823at 835.935 kb on + strand, within Dsui_0823at 835.964 kb on + strand, within Dsui_0823at 835.971 kb on - strand, within Dsui_0823at 835.987 kb on + strand, within Dsui_0823at 835.992 kb on + strand, within Dsui_0823at 836.000 kb on - strand, within Dsui_0823at 836.000 kb on - strand, within Dsui_0823at 836.007 kb on - strand, within Dsui_0823at 836.018 kb on + strand, within Dsui_0823at 836.043 kb on - strand, within Dsui_0823at 836.043 kb on - strand, within Dsui_0823at 836.043 kb on - strand, within Dsui_0823at 836.115 kb on + strand, within Dsui_0823at 836.123 kb on - strand, within Dsui_0823at 836.124 kb on - strand, within Dsui_0823at 836.124 kb on - strand, within Dsui_0823at 836.124 kb on - strand, within Dsui_0823at 836.193 kb on - strand, within Dsui_0823at 836.238 kb on - strand, within Dsui_0823at 836.240 kb on + strand, within Dsui_0823at 836.240 kb on + strand, within Dsui_0823at 836.252 kb on - strandat 836.289 kb on + strandat 836.301 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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834,636 + -0.6
834,639 - -0.2
834,678 + -0.6
834,678 + -1.9
834,708 + -3.2
834,720 + -2.4
834,736 + +0.7
834,743 - -0.0
834,764 - -0.7
834,770 + +0.6
834,775 + +0.3
834,778 - +0.4
834,778 - +0.2
834,779 - -0.1
834,785 - +1.3
834,785 - +0.3
834,854 + +0.2
834,854 + -0.4
834,856 + -0.2
834,858 - +1.0
834,862 - +0.6
834,886 - Dsui_0822 0.12 +1.0
834,935 - Dsui_0822 0.22 +0.4
834,935 - Dsui_0822 0.22 +0.2
834,950 - Dsui_0822 0.25 +0.9
834,967 + Dsui_0822 0.29 +0.8
835,007 - Dsui_0822 0.37 +0.4
835,046 - Dsui_0822 0.45 +1.6
835,073 - Dsui_0822 0.51 +0.7
835,083 - Dsui_0822 0.53 +0.4
835,109 + Dsui_0822 0.58 +0.4
835,109 + Dsui_0822 0.58 +0.2
835,117 - Dsui_0822 0.60 +1.1
835,117 - Dsui_0822 0.60 -0.7
835,118 - Dsui_0822 0.60 +0.6
835,127 - Dsui_0822 0.62 +0.5
835,153 - Dsui_0822 0.68 +0.1
835,161 - Dsui_0822 0.69 +1.5
835,162 + Dsui_0822 0.69 +1.2
835,170 - Dsui_0822 0.71 +0.4
835,217 + Dsui_0822 0.81 +0.5
835,217 + Dsui_0822 0.81 +2.1
835,219 + Dsui_0822 0.81 -0.6
835,219 - Dsui_0822 0.81 -0.2
835,241 + Dsui_0822 0.86 +1.7
835,249 - Dsui_0822 0.88 +1.2
835,317 + +0.0
835,318 - -0.4
835,318 - +1.5
835,325 - +1.2
835,326 - -0.3
835,360 - +1.0
835,414 - +0.6
835,420 + -0.2
835,422 + +0.1
835,430 + +0.6
835,430 + +0.8
835,430 - +0.3
835,430 - +2.3
835,430 - -2.5
835,432 - +0.7
835,438 - +0.2
835,438 - -1.0
835,438 - +0.3
835,438 - +2.3
835,483 + +0.9
835,491 - -1.3
835,515 - Dsui_0823 0.10 +0.3
835,515 - Dsui_0823 0.10 +0.3
835,520 - Dsui_0823 0.11 -0.1
835,573 - Dsui_0823 0.17 +0.3
835,590 + Dsui_0823 0.18 -1.5
835,637 + Dsui_0823 0.24 -4.1
835,651 + Dsui_0823 0.25 -3.5
835,670 + Dsui_0823 0.27 +0.2
835,688 - Dsui_0823 0.29 +1.3
835,703 + Dsui_0823 0.31 -1.4
835,703 + Dsui_0823 0.31 -0.5
835,706 - Dsui_0823 0.31 -1.7
835,717 + Dsui_0823 0.32 -0.1
835,725 - Dsui_0823 0.33 -0.3
835,738 + Dsui_0823 0.35 -1.3
835,740 - Dsui_0823 0.35 +1.0
835,744 + Dsui_0823 0.35 +0.3
835,757 - Dsui_0823 0.37 +0.5
835,807 + Dsui_0823 0.42 -0.4
835,815 - Dsui_0823 0.43 -0.9
835,815 - Dsui_0823 0.43 +2.1
835,815 - Dsui_0823 0.43 +1.3
835,815 - Dsui_0823 0.43 +0.1
835,815 - Dsui_0823 0.43 +0.9
835,848 + Dsui_0823 0.47 -0.5
835,848 + Dsui_0823 0.47 -0.2
835,871 - Dsui_0823 0.49 +0.8
835,915 - Dsui_0823 0.54 +1.8
835,930 + Dsui_0823 0.56 +0.9
835,935 + Dsui_0823 0.56 +0.2
835,964 + Dsui_0823 0.59 -2.2
835,971 - Dsui_0823 0.60 +1.0
835,987 + Dsui_0823 0.62 -0.9
835,992 + Dsui_0823 0.62 +1.9
836,000 - Dsui_0823 0.63 +2.2
836,000 - Dsui_0823 0.63 +0.0
836,007 - Dsui_0823 0.64 +0.3
836,018 + Dsui_0823 0.65 +1.0
836,043 - Dsui_0823 0.68 +1.5
836,043 - Dsui_0823 0.68 +0.3
836,043 - Dsui_0823 0.68 +1.0
836,115 + Dsui_0823 0.76 +0.5
836,123 - Dsui_0823 0.77 -1.9
836,124 - Dsui_0823 0.77 -0.3
836,124 - Dsui_0823 0.77 +1.4
836,124 - Dsui_0823 0.77 +1.0
836,193 - Dsui_0823 0.85 +0.4
836,238 - Dsui_0823 0.89 +0.2
836,240 + Dsui_0823 0.90 +0.5
836,240 + Dsui_0823 0.90 -1.7
836,252 - +1.8
836,289 + +1.0
836,301 + -0.1

Or see this region's nucleotide sequence