Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0819 and Dsui_0820 are separated by 10 nucleotides Dsui_0820 and Dsui_0821 are separated by 189 nucleotides Dsui_0821 and Dsui_0822 are separated by 89 nucleotides Dsui_0822 and Dsui_0823 are separated by 114 nucleotides
Dsui_0819: Dsui_0819 - DNA protecting protein DprA, at 830,349 to 831,467
_0819
Dsui_0820: Dsui_0820 - hypothetical protein, at 831,478 to 831,966
_0820
Dsui_0821: Dsui_0821 - DNA topoisomerase III, at 832,156 to 834,741
_0821
Dsui_0822: Dsui_0822 - DNA-binding ferritin-like protein (oxidative damage protectant), at 834,831 to 835,307
_0822
Dsui_0823: Dsui_0823 - transcriptional regulator, at 835,422 to 836,333
_0823
Position (kb)
832
833
834
835 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 831.171 kb on - strand, within Dsui_0819 at 831.183 kb on + strand, within Dsui_0819 at 831.330 kb on - strand, within Dsui_0819 at 831.330 kb on - strand, within Dsui_0819 at 831.330 kb on - strand, within Dsui_0819 at 831.332 kb on + strand, within Dsui_0819 at 831.363 kb on + strand at 831.363 kb on + strand at 831.371 kb on - strand at 831.416 kb on + strand at 831.427 kb on + strand at 831.471 kb on - strand at 831.471 kb on - strand at 831.471 kb on - strand at 831.535 kb on - strand, within Dsui_0820 at 831.587 kb on + strand, within Dsui_0820 at 831.619 kb on + strand, within Dsui_0820 at 831.645 kb on + strand, within Dsui_0820 at 831.652 kb on - strand, within Dsui_0820 at 831.653 kb on + strand, within Dsui_0820 at 831.716 kb on - strand, within Dsui_0820 at 831.767 kb on + strand, within Dsui_0820 at 831.775 kb on - strand, within Dsui_0820 at 831.777 kb on + strand, within Dsui_0820 at 831.785 kb on - strand, within Dsui_0820 at 831.797 kb on + strand, within Dsui_0820 at 831.819 kb on - strand, within Dsui_0820 at 831.822 kb on + strand, within Dsui_0820 at 831.860 kb on + strand, within Dsui_0820 at 831.861 kb on + strand, within Dsui_0820 at 831.914 kb on + strand, within Dsui_0820 at 832.013 kb on + strand at 832.049 kb on + strand at 832.055 kb on + strand at 832.064 kb on + strand at 834.636 kb on + strand at 834.639 kb on - strand at 834.678 kb on + strand at 834.678 kb on + strand at 834.708 kb on + strand at 834.720 kb on + strand at 834.736 kb on + strand at 834.743 kb on - strand at 834.764 kb on - strand at 834.770 kb on + strand at 834.775 kb on + strand at 834.778 kb on - strand at 834.778 kb on - strand at 834.779 kb on - strand at 834.785 kb on - strand at 834.785 kb on - strand at 834.854 kb on + strand at 834.854 kb on + strand at 834.856 kb on + strand at 834.858 kb on - strand at 834.862 kb on - strand at 834.886 kb on - strand, within Dsui_0822 at 834.935 kb on - strand, within Dsui_0822 at 834.935 kb on - strand, within Dsui_0822 at 834.950 kb on - strand, within Dsui_0822 at 834.967 kb on + strand, within Dsui_0822 at 835.007 kb on - strand, within Dsui_0822 at 835.046 kb on - strand, within Dsui_0822 at 835.073 kb on - strand, within Dsui_0822 at 835.083 kb on - strand, within Dsui_0822 at 835.109 kb on + strand, within Dsui_0822 at 835.109 kb on + strand, within Dsui_0822 at 835.117 kb on - strand, within Dsui_0822 at 835.117 kb on - strand, within Dsui_0822 at 835.118 kb on - strand, within Dsui_0822 at 835.127 kb on - strand, within Dsui_0822 at 835.153 kb on - strand, within Dsui_0822 at 835.161 kb on - strand, within Dsui_0822 at 835.162 kb on + strand, within Dsui_0822 at 835.170 kb on - strand, within Dsui_0822 at 835.217 kb on + strand, within Dsui_0822 at 835.217 kb on + strand, within Dsui_0822 at 835.219 kb on + strand, within Dsui_0822 at 835.219 kb on - strand, within Dsui_0822 at 835.241 kb on + strand, within Dsui_0822 at 835.249 kb on - strand, within Dsui_0822 at 835.317 kb on + strand at 835.318 kb on - strand at 835.318 kb on - strand at 835.325 kb on - strand at 835.326 kb on - strand at 835.360 kb on - strand at 835.414 kb on - strand at 835.420 kb on + strand at 835.422 kb on + strand at 835.430 kb on + strand at 835.430 kb on + strand at 835.430 kb on - strand at 835.430 kb on - strand at 835.430 kb on - strand at 835.432 kb on - strand at 835.438 kb on - strand at 835.438 kb on - strand at 835.438 kb on - strand at 835.438 kb on - strand at 835.483 kb on + strand at 835.491 kb on - strand at 835.515 kb on - strand, within Dsui_0823 at 835.515 kb on - strand, within Dsui_0823 at 835.520 kb on - strand, within Dsui_0823 at 835.573 kb on - strand, within Dsui_0823 at 835.590 kb on + strand, within Dsui_0823 at 835.637 kb on + strand, within Dsui_0823 at 835.651 kb on + strand, within Dsui_0823 at 835.670 kb on + strand, within Dsui_0823 at 835.688 kb on - strand, within Dsui_0823 at 835.703 kb on + strand, within Dsui_0823 at 835.703 kb on + strand, within Dsui_0823 at 835.706 kb on - strand, within Dsui_0823 at 835.717 kb on + strand, within Dsui_0823 at 835.725 kb on - strand, within Dsui_0823 at 835.738 kb on + strand, within Dsui_0823 at 835.740 kb on - strand, within Dsui_0823
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 831,171 - Dsui_0819 0.73 +0.0 831,183 + Dsui_0819 0.75 -0.9 831,330 - Dsui_0819 0.88 -1.9 831,330 - Dsui_0819 0.88 +0.4 831,330 - Dsui_0819 0.88 +1.5 831,332 + Dsui_0819 0.88 -0.7 831,363 + -1.8 831,363 + -0.8 831,371 - -0.3 831,416 + +0.3 831,427 + +2.4 831,471 - +0.2 831,471 - +0.2 831,471 - -2.6 831,535 - Dsui_0820 0.12 +0.1 831,587 + Dsui_0820 0.22 -0.5 831,619 + Dsui_0820 0.29 +0.2 831,645 + Dsui_0820 0.34 -0.3 831,652 - Dsui_0820 0.36 +0.7 831,653 + Dsui_0820 0.36 +0.8 831,716 - Dsui_0820 0.49 +1.0 831,767 + Dsui_0820 0.59 +0.3 831,775 - Dsui_0820 0.61 +0.3 831,777 + Dsui_0820 0.61 +0.3 831,785 - Dsui_0820 0.63 -0.0 831,797 + Dsui_0820 0.65 +1.0 831,819 - Dsui_0820 0.70 +0.5 831,822 + Dsui_0820 0.70 +0.5 831,860 + Dsui_0820 0.78 +0.6 831,861 + Dsui_0820 0.78 +1.2 831,914 + Dsui_0820 0.89 -0.1 832,013 + +1.2 832,049 + +0.8 832,055 + +0.5 832,064 + +0.1 834,636 + -0.6 834,639 - -0.2 834,678 + -0.6 834,678 + -1.9 834,708 + -3.2 834,720 + -2.4 834,736 + +0.7 834,743 - -0.0 834,764 - -0.7 834,770 + +0.6 834,775 + +0.3 834,778 - +0.4 834,778 - +0.2 834,779 - -0.1 834,785 - +1.3 834,785 - +0.3 834,854 + +0.2 834,854 + -0.4 834,856 + -0.2 834,858 - +1.0 834,862 - +0.6 834,886 - Dsui_0822 0.12 +1.0 834,935 - Dsui_0822 0.22 +0.4 834,935 - Dsui_0822 0.22 +0.2 834,950 - Dsui_0822 0.25 +0.9 834,967 + Dsui_0822 0.29 +0.8 835,007 - Dsui_0822 0.37 +0.4 835,046 - Dsui_0822 0.45 +1.6 835,073 - Dsui_0822 0.51 +0.7 835,083 - Dsui_0822 0.53 +0.4 835,109 + Dsui_0822 0.58 +0.4 835,109 + Dsui_0822 0.58 +0.2 835,117 - Dsui_0822 0.60 +1.1 835,117 - Dsui_0822 0.60 -0.7 835,118 - Dsui_0822 0.60 +0.6 835,127 - Dsui_0822 0.62 +0.5 835,153 - Dsui_0822 0.68 +0.1 835,161 - Dsui_0822 0.69 +1.5 835,162 + Dsui_0822 0.69 +1.2 835,170 - Dsui_0822 0.71 +0.4 835,217 + Dsui_0822 0.81 +0.5 835,217 + Dsui_0822 0.81 +2.1 835,219 + Dsui_0822 0.81 -0.6 835,219 - Dsui_0822 0.81 -0.2 835,241 + Dsui_0822 0.86 +1.7 835,249 - Dsui_0822 0.88 +1.2 835,317 + +0.0 835,318 - -0.4 835,318 - +1.5 835,325 - +1.2 835,326 - -0.3 835,360 - +1.0 835,414 - +0.6 835,420 + -0.2 835,422 + +0.1 835,430 + +0.6 835,430 + +0.8 835,430 - +0.3 835,430 - +2.3 835,430 - -2.5 835,432 - +0.7 835,438 - +0.2 835,438 - -1.0 835,438 - +0.3 835,438 - +2.3 835,483 + +0.9 835,491 - -1.3 835,515 - Dsui_0823 0.10 +0.3 835,515 - Dsui_0823 0.10 +0.3 835,520 - Dsui_0823 0.11 -0.1 835,573 - Dsui_0823 0.17 +0.3 835,590 + Dsui_0823 0.18 -1.5 835,637 + Dsui_0823 0.24 -4.1 835,651 + Dsui_0823 0.25 -3.5 835,670 + Dsui_0823 0.27 +0.2 835,688 - Dsui_0823 0.29 +1.3 835,703 + Dsui_0823 0.31 -1.4 835,703 + Dsui_0823 0.31 -0.5 835,706 - Dsui_0823 0.31 -1.7 835,717 + Dsui_0823 0.32 -0.1 835,725 - Dsui_0823 0.33 -0.3 835,738 + Dsui_0823 0.35 -1.3 835,740 - Dsui_0823 0.35 +1.0
Or see this region's nucleotide sequence