Strain Fitness in Dechlorosoma suillum PS around Dsui_0562

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0561 and Dsui_0562 are separated by 45 nucleotidesDsui_0562 and Dsui_0563 are separated by 125 nucleotidesDsui_0563 and Dsui_0564 overlap by 11 nucleotides Dsui_0561: Dsui_0561 - ModE molybdate transport repressor domain/molybdenum-pterin binding domain protein, at 561,503 to 562,321 _0561 Dsui_0562: Dsui_0562 - molybdenum ABC transporter, periplasmic molybdate-binding protein, at 562,367 to 563,146 _0562 Dsui_0563: Dsui_0563 - molybdate ABC transporter, permease protein, at 563,272 to 563,952 _0563 Dsui_0564: Dsui_0564 - molybdenum ABC transporter, ATP-binding protein, at 563,942 to 565,039 _0564 Position (kb) 562 563 564Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 561.382 kb on - strandat 561.382 kb on - strandat 561.438 kb on + strandat 561.496 kb on + strandat 561.496 kb on + strandat 561.497 kb on + strandat 561.497 kb on + strandat 561.497 kb on + strandat 561.497 kb on + strandat 561.497 kb on + strandat 561.497 kb on + strandat 561.498 kb on - strandat 561.504 kb on - strandat 561.504 kb on - strandat 561.505 kb on - strandat 561.505 kb on - strandat 561.505 kb on - strandat 561.505 kb on - strandat 561.507 kb on + strandat 561.507 kb on + strandat 561.507 kb on + strandat 561.517 kb on + strandat 561.529 kb on + strandat 561.529 kb on + strandat 561.529 kb on + strandat 561.534 kb on + strandat 561.537 kb on - strandat 561.542 kb on + strandat 561.561 kb on - strandat 561.597 kb on - strand, within Dsui_0561at 561.597 kb on - strand, within Dsui_0561at 561.627 kb on + strand, within Dsui_0561at 561.635 kb on + strand, within Dsui_0561at 561.635 kb on + strand, within Dsui_0561at 561.642 kb on - strand, within Dsui_0561at 561.810 kb on - strand, within Dsui_0561at 561.812 kb on + strand, within Dsui_0561at 561.840 kb on - strand, within Dsui_0561at 561.960 kb on + strand, within Dsui_0561at 562.031 kb on - strand, within Dsui_0561at 562.042 kb on + strand, within Dsui_0561at 562.056 kb on - strand, within Dsui_0561at 562.069 kb on + strand, within Dsui_0561at 562.078 kb on - strand, within Dsui_0561at 562.083 kb on - strand, within Dsui_0561at 562.091 kb on - strand, within Dsui_0561at 562.185 kb on + strand, within Dsui_0561at 562.185 kb on + strand, within Dsui_0561at 562.185 kb on + strand, within Dsui_0561at 562.185 kb on + strand, within Dsui_0561at 562.185 kb on + strand, within Dsui_0561at 562.187 kb on - strand, within Dsui_0561at 562.278 kb on - strandat 562.290 kb on - strandat 562.352 kb on - strandat 562.373 kb on - strandat 562.543 kb on - strand, within Dsui_0562at 562.561 kb on + strand, within Dsui_0562at 562.667 kb on + strand, within Dsui_0562at 562.699 kb on + strand, within Dsui_0562at 562.704 kb on + strand, within Dsui_0562at 562.712 kb on - strand, within Dsui_0562at 562.763 kb on - strand, within Dsui_0562at 562.779 kb on + strand, within Dsui_0562at 562.787 kb on - strand, within Dsui_0562at 562.880 kb on + strand, within Dsui_0562at 562.894 kb on - strand, within Dsui_0562at 562.923 kb on + strand, within Dsui_0562at 562.963 kb on + strand, within Dsui_0562at 562.971 kb on - strand, within Dsui_0562at 562.971 kb on - strand, within Dsui_0562at 562.971 kb on - strand, within Dsui_0562at 562.971 kb on - strand, within Dsui_0562at 562.971 kb on - strand, within Dsui_0562at 562.983 kb on + strand, within Dsui_0562at 563.010 kb on - strand, within Dsui_0562at 563.010 kb on - strand, within Dsui_0562at 563.048 kb on + strand, within Dsui_0562at 563.053 kb on + strand, within Dsui_0562at 563.067 kb on - strand, within Dsui_0562at 563.083 kb on + strandat 563.107 kb on + strandat 563.115 kb on - strandat 563.258 kb on + strandat 563.266 kb on - strandat 563.312 kb on + strandat 563.312 kb on + strandat 563.320 kb on - strandat 563.322 kb on + strandat 563.433 kb on - strand, within Dsui_0563at 563.442 kb on + strand, within Dsui_0563at 563.467 kb on - strand, within Dsui_0563at 563.535 kb on + strand, within Dsui_0563at 563.536 kb on + strand, within Dsui_0563at 563.536 kb on + strand, within Dsui_0563at 563.571 kb on + strand, within Dsui_0563at 563.571 kb on + strand, within Dsui_0563at 563.579 kb on - strand, within Dsui_0563at 563.588 kb on + strand, within Dsui_0563at 563.593 kb on + strand, within Dsui_0563at 563.601 kb on - strand, within Dsui_0563at 563.731 kb on + strand, within Dsui_0563at 563.750 kb on - strand, within Dsui_0563at 563.751 kb on - strand, within Dsui_0563at 563.832 kb on - strand, within Dsui_0563at 563.835 kb on + strand, within Dsui_0563at 563.843 kb on - strand, within Dsui_0563at 564.086 kb on + strand, within Dsui_0564at 564.132 kb on + strand, within Dsui_0564at 564.132 kb on + strand, within Dsui_0564at 564.132 kb on + strand, within Dsui_0564

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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561,382 - +0.7
561,382 - -0.6
561,438 + -1.5
561,496 + -3.1
561,496 + -0.3
561,497 + -0.9
561,497 + +2.0
561,497 + +0.8
561,497 + +0.5
561,497 + +0.9
561,497 + +3.6
561,498 - -0.1
561,504 - +0.9
561,504 - +0.6
561,505 - +1.2
561,505 - -1.8
561,505 - -0.4
561,505 - +0.6
561,507 + -1.7
561,507 + +0.0
561,507 + -0.9
561,517 + +0.4
561,529 + +0.6
561,529 + +0.5
561,529 + +2.7
561,534 + +0.2
561,537 - +0.2
561,542 + +0.7
561,561 - +0.9
561,597 - Dsui_0561 0.11 +0.2
561,597 - Dsui_0561 0.11 -0.4
561,627 + Dsui_0561 0.15 +0.8
561,635 + Dsui_0561 0.16 +0.8
561,635 + Dsui_0561 0.16 +1.4
561,642 - Dsui_0561 0.17 +0.7
561,810 - Dsui_0561 0.37 -1.8
561,812 + Dsui_0561 0.38 +0.6
561,840 - Dsui_0561 0.41 -2.1
561,960 + Dsui_0561 0.56 +0.1
562,031 - Dsui_0561 0.64 -0.4
562,042 + Dsui_0561 0.66 +1.0
562,056 - Dsui_0561 0.68 +1.4
562,069 + Dsui_0561 0.69 +0.2
562,078 - Dsui_0561 0.70 +2.2
562,083 - Dsui_0561 0.71 +0.2
562,091 - Dsui_0561 0.72 +0.1
562,185 + Dsui_0561 0.83 +0.6
562,185 + Dsui_0561 0.83 +1.9
562,185 + Dsui_0561 0.83 +0.7
562,185 + Dsui_0561 0.83 +1.9
562,185 + Dsui_0561 0.83 +0.5
562,187 - Dsui_0561 0.84 -0.1
562,278 - +0.4
562,290 - +1.1
562,352 - -0.6
562,373 - -0.6
562,543 - Dsui_0562 0.23 -3.5
562,561 + Dsui_0562 0.25 -5.8
562,667 + Dsui_0562 0.38 -6.1
562,699 + Dsui_0562 0.43 -4.5
562,704 + Dsui_0562 0.43 -3.6
562,712 - Dsui_0562 0.44 -7.3
562,763 - Dsui_0562 0.51 -2.0
562,779 + Dsui_0562 0.53 -3.0
562,787 - Dsui_0562 0.54 -5.1
562,880 + Dsui_0562 0.66 -5.1
562,894 - Dsui_0562 0.68 -1.9
562,923 + Dsui_0562 0.71 -2.3
562,963 + Dsui_0562 0.76 -3.8
562,971 - Dsui_0562 0.77 -5.9
562,971 - Dsui_0562 0.77 -4.3
562,971 - Dsui_0562 0.77 -2.4
562,971 - Dsui_0562 0.77 -5.8
562,971 - Dsui_0562 0.77 -3.8
562,983 + Dsui_0562 0.79 -6.3
563,010 - Dsui_0562 0.82 -4.2
563,010 - Dsui_0562 0.82 -4.3
563,048 + Dsui_0562 0.87 -2.9
563,053 + Dsui_0562 0.88 -4.1
563,067 - Dsui_0562 0.90 -4.0
563,083 + -1.8
563,107 + -4.1
563,115 - -5.4
563,258 + -4.2
563,266 - +0.8
563,312 + -4.4
563,312 + -4.6
563,320 - -3.5
563,322 + -2.9
563,433 - Dsui_0563 0.24 -2.7
563,442 + Dsui_0563 0.25 -4.9
563,467 - Dsui_0563 0.29 -4.2
563,535 + Dsui_0563 0.39 -4.3
563,536 + Dsui_0563 0.39 -4.2
563,536 + Dsui_0563 0.39 -7.5
563,571 + Dsui_0563 0.44 -4.7
563,571 + Dsui_0563 0.44 -5.2
563,579 - Dsui_0563 0.45 -4.7
563,588 + Dsui_0563 0.46 -5.3
563,593 + Dsui_0563 0.47 -2.0
563,601 - Dsui_0563 0.48 -6.2
563,731 + Dsui_0563 0.67 -4.6
563,750 - Dsui_0563 0.70 -3.0
563,751 - Dsui_0563 0.70 -3.8
563,832 - Dsui_0563 0.82 -2.2
563,835 + Dsui_0563 0.83 -5.9
563,843 - Dsui_0563 0.84 -5.0
564,086 + Dsui_0564 0.13 -6.7
564,132 + Dsui_0564 0.17 -6.4
564,132 + Dsui_0564 0.17 -3.3
564,132 + Dsui_0564 0.17 -5.3

Or see this region's nucleotide sequence