Strain Fitness in Dechlorosoma suillum PS around Dsui_0516

Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0514 and Dsui_0515 are separated by 131 nucleotidesDsui_0515 and Dsui_0516 are separated by 87 nucleotidesDsui_0516 and Dsui_0517 are separated by 20 nucleotides Dsui_0514: Dsui_0514 - hypothetical protein, at 518,915 to 520,018 _0514 Dsui_0515: Dsui_0515 - hypothetical protein, at 520,150 to 520,350 _0515 Dsui_0516: Dsui_0516 - Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) (from data), at 520,438 to 522,429 _0516 Dsui_0517: Dsui_0517 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) (from data), at 522,450 to 523,982 _0517 Position (kb) 520 521 522 523Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 519.472 kb on - strandat 519.513 kb on + strand, within Dsui_0514at 519.513 kb on + strand, within Dsui_0514at 519.525 kb on + strand, within Dsui_0514at 519.539 kb on - strand, within Dsui_0514at 519.569 kb on - strand, within Dsui_0514at 519.582 kb on + strand, within Dsui_0514at 519.642 kb on - strand, within Dsui_0514at 519.747 kb on + strand, within Dsui_0514at 519.747 kb on + strand, within Dsui_0514at 519.815 kb on + strand, within Dsui_0514at 519.815 kb on + strand, within Dsui_0514at 519.833 kb on + strand, within Dsui_0514at 519.833 kb on - strand, within Dsui_0514at 519.841 kb on - strand, within Dsui_0514at 519.902 kb on - strand, within Dsui_0514at 519.984 kb on - strandat 519.991 kb on - strandat 520.163 kb on + strandat 520.238 kb on - strand, within Dsui_0515at 520.294 kb on - strand, within Dsui_0515at 520.299 kb on - strand, within Dsui_0515at 520.360 kb on + strandat 520.508 kb on + strandat 520.531 kb on - strandat 520.551 kb on - strandat 520.575 kb on - strandat 520.651 kb on - strand, within Dsui_0516at 520.681 kb on + strand, within Dsui_0516at 520.746 kb on + strand, within Dsui_0516at 520.801 kb on - strand, within Dsui_0516at 520.824 kb on - strand, within Dsui_0516at 520.824 kb on - strand, within Dsui_0516at 520.852 kb on + strand, within Dsui_0516at 520.914 kb on - strand, within Dsui_0516at 520.935 kb on - strand, within Dsui_0516at 521.008 kb on - strand, within Dsui_0516at 521.307 kb on - strand, within Dsui_0516at 521.463 kb on - strand, within Dsui_0516at 521.513 kb on - strand, within Dsui_0516at 521.547 kb on + strand, within Dsui_0516at 521.649 kb on - strand, within Dsui_0516at 521.649 kb on - strand, within Dsui_0516at 521.725 kb on - strand, within Dsui_0516at 521.858 kb on - strand, within Dsui_0516at 521.870 kb on + strand, within Dsui_0516at 522.041 kb on + strand, within Dsui_0516at 522.041 kb on + strand, within Dsui_0516at 522.059 kb on + strand, within Dsui_0516at 522.185 kb on + strand, within Dsui_0516at 522.235 kb on - strandat 522.258 kb on + strandat 522.403 kb on + strandat 522.470 kb on - strandat 522.515 kb on + strandat 522.620 kb on - strand, within Dsui_0517at 522.682 kb on + strand, within Dsui_0517at 522.766 kb on - strand, within Dsui_0517at 522.783 kb on - strand, within Dsui_0517at 522.829 kb on + strand, within Dsui_0517at 522.839 kb on + strand, within Dsui_0517at 523.065 kb on - strand, within Dsui_0517at 523.075 kb on - strand, within Dsui_0517at 523.283 kb on - strand, within Dsui_0517

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Per-strain Table

Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
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519,472 - +1.0
519,513 + Dsui_0514 0.54 +0.4
519,513 + Dsui_0514 0.54 +1.4
519,525 + Dsui_0514 0.55 -0.0
519,539 - Dsui_0514 0.57 -4.2
519,569 - Dsui_0514 0.59 +2.0
519,582 + Dsui_0514 0.60 +1.1
519,642 - Dsui_0514 0.66 +0.1
519,747 + Dsui_0514 0.75 +0.5
519,747 + Dsui_0514 0.75 -0.1
519,815 + Dsui_0514 0.82 +0.8
519,815 + Dsui_0514 0.82 +1.2
519,833 + Dsui_0514 0.83 +1.7
519,833 - Dsui_0514 0.83 +0.2
519,841 - Dsui_0514 0.84 -0.5
519,902 - Dsui_0514 0.89 -1.6
519,984 - +0.7
519,991 - +0.5
520,163 + -0.8
520,238 - Dsui_0515 0.44 -0.2
520,294 - Dsui_0515 0.72 +0.7
520,299 - Dsui_0515 0.74 +0.1
520,360 + +0.5
520,508 + -0.6
520,531 - +1.0
520,551 - +0.9
520,575 - +0.7
520,651 - Dsui_0516 0.11 -0.2
520,681 + Dsui_0516 0.12 -0.7
520,746 + Dsui_0516 0.15 +0.3
520,801 - Dsui_0516 0.18 -2.0
520,824 - Dsui_0516 0.19 +0.8
520,824 - Dsui_0516 0.19 -0.3
520,852 + Dsui_0516 0.21 +1.1
520,914 - Dsui_0516 0.24 -4.0
520,935 - Dsui_0516 0.25 -1.8
521,008 - Dsui_0516 0.29 +0.4
521,307 - Dsui_0516 0.44 +1.0
521,463 - Dsui_0516 0.51 -1.7
521,513 - Dsui_0516 0.54 -2.4
521,547 + Dsui_0516 0.56 +0.1
521,649 - Dsui_0516 0.61 -3.9
521,649 - Dsui_0516 0.61 -0.9
521,725 - Dsui_0516 0.65 +0.0
521,858 - Dsui_0516 0.71 -0.2
521,870 + Dsui_0516 0.72 -1.2
522,041 + Dsui_0516 0.80 -0.4
522,041 + Dsui_0516 0.80 -1.8
522,059 + Dsui_0516 0.81 -2.2
522,185 + Dsui_0516 0.88 -3.6
522,235 - -0.3
522,258 + -3.3
522,403 + +0.4
522,470 - +0.3
522,515 + -2.7
522,620 - Dsui_0517 0.11 -0.8
522,682 + Dsui_0517 0.15 -1.4
522,766 - Dsui_0517 0.21 +0.9
522,783 - Dsui_0517 0.22 -1.6
522,829 + Dsui_0517 0.25 -1.4
522,839 + Dsui_0517 0.25 -1.8
523,065 - Dsui_0517 0.40 +1.0
523,075 - Dsui_0517 0.41 +0.5
523,283 - Dsui_0517 0.54 -3.4

Or see this region's nucleotide sequence