Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0285 and Dsui_0286 overlap by 4 nucleotides Dsui_0286 and Dsui_0287 are separated by 237 nucleotides Dsui_0287 and Dsui_0288 are separated by 52 nucleotides
Dsui_0285: Dsui_0285 - methionine aminopeptidase, type I, at 285,562 to 286,386
_0285
Dsui_0286: Dsui_0286 - Protein of unknown function (DUF3423), at 286,383 to 286,613
_0286
Dsui_0287: Dsui_0287 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 286,851 to 287,327
_0287
Dsui_0288: Dsui_0288 - hypothetical protein, at 287,380 to 287,595
_0288
Position (kb) 286
287 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 285.442 kb on - strand at 285.442 kb on - strand at 285.537 kb on - strand at 285.560 kb on + strand at 285.563 kb on - strand at 285.568 kb on - strand at 285.568 kb on - strand at 285.574 kb on - strand at 285.585 kb on - strand at 285.610 kb on + strand at 285.658 kb on + strand, within Dsui_0285 at 285.666 kb on - strand, within Dsui_0285 at 285.697 kb on + strand, within Dsui_0285 at 285.703 kb on + strand at 285.711 kb on - strand, within Dsui_0285 at 285.773 kb on - strand, within Dsui_0285 at 285.797 kb on - strand, within Dsui_0285 at 285.824 kb on - strand, within Dsui_0285 at 285.852 kb on - strand, within Dsui_0285 at 285.852 kb on - strand, within Dsui_0285 at 285.887 kb on + strand at 285.895 kb on - strand, within Dsui_0285 at 285.913 kb on + strand at 285.983 kb on + strand, within Dsui_0285 at 286.042 kb on + strand at 286.154 kb on - strand, within Dsui_0285 at 286.172 kb on + strand at 286.178 kb on + strand, within Dsui_0285 at 286.179 kb on - strand, within Dsui_0285 at 286.180 kb on - strand, within Dsui_0285 at 286.180 kb on - strand, within Dsui_0285 at 286.180 kb on - strand, within Dsui_0285 at 286.180 kb on - strand, within Dsui_0285 at 286.180 kb on - strand, within Dsui_0285 at 286.186 kb on - strand, within Dsui_0285 at 286.190 kb on - strand, within Dsui_0285 at 286.302 kb on + strand at 286.341 kb on - strand at 286.425 kb on + strand at 286.425 kb on + strand at 286.433 kb on - strand, within Dsui_0286 at 286.471 kb on + strand at 286.471 kb on + strand, within Dsui_0286 at 286.479 kb on - strand, within Dsui_0286 at 286.479 kb on - strand, within Dsui_0286 at 286.479 kb on - strand, within Dsui_0286 at 286.479 kb on - strand, within Dsui_0286 at 286.484 kb on - strand, within Dsui_0286 at 286.489 kb on - strand, within Dsui_0286 at 286.489 kb on - strand, within Dsui_0286 at 286.548 kb on + strand, within Dsui_0286 at 286.548 kb on + strand, within Dsui_0286 at 286.556 kb on - strand, within Dsui_0286 at 286.608 kb on + strand at 286.616 kb on - strand at 286.616 kb on - strand at 286.618 kb on + strand at 286.669 kb on + strand at 286.674 kb on + strand at 286.674 kb on + strand at 286.674 kb on + strand at 286.674 kb on + strand at 286.682 kb on - strand at 286.682 kb on - strand at 286.682 kb on - strand at 286.744 kb on - strand at 286.788 kb on + strand at 286.791 kb on - strand at 287.172 kb on + strand, within Dsui_0287 at 287.194 kb on - strand, within Dsui_0287 at 287.303 kb on + strand at 287.469 kb on + strand, within Dsui_0288 at 287.479 kb on + strand, within Dsui_0288 at 287.487 kb on - strand, within Dsui_0288 at 287.506 kb on + strand, within Dsui_0288 at 287.531 kb on + strand, within Dsui_0288 at 287.539 kb on - strand, within Dsui_0288 at 287.563 kb on - strand, within Dsui_0288 at 287.565 kb on + strand, within Dsui_0288 at 287.565 kb on + strand, within Dsui_0288 at 287.565 kb on + strand, within Dsui_0288 at 287.575 kb on + strand at 287.584 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 285,442 - +0.6 285,442 - +1.0 285,537 - -0.7 285,560 + +1.2 285,563 - -0.1 285,568 - +2.0 285,568 - +0.1 285,574 - +0.4 285,585 - -0.3 285,610 + -1.5 285,658 + Dsui_0285 0.12 +0.3 285,666 - Dsui_0285 0.13 +1.0 285,697 + Dsui_0285 0.16 -0.8 285,703 + -2.6 285,711 - Dsui_0285 0.18 +1.2 285,773 - Dsui_0285 0.26 +3.5 285,797 - Dsui_0285 0.28 +2.4 285,824 - Dsui_0285 0.32 -0.3 285,852 - Dsui_0285 0.35 +0.1 285,852 - Dsui_0285 0.35 +0.2 285,887 + +0.0 285,895 - Dsui_0285 0.40 +0.8 285,913 + -1.7 285,983 + Dsui_0285 0.51 -0.3 286,042 + -2.8 286,154 - Dsui_0285 0.72 +0.3 286,172 + -1.4 286,178 + Dsui_0285 0.75 -0.2 286,179 - Dsui_0285 0.75 +0.3 286,180 - Dsui_0285 0.75 -2.7 286,180 - Dsui_0285 0.75 -3.8 286,180 - Dsui_0285 0.75 +0.4 286,180 - Dsui_0285 0.75 -2.6 286,180 - Dsui_0285 0.75 +0.4 286,186 - Dsui_0285 0.76 +1.2 286,190 - Dsui_0285 0.76 +1.4 286,302 + -0.3 286,341 - +0.5 286,425 + -1.4 286,425 + +0.5 286,433 - Dsui_0286 0.22 +1.5 286,471 + +0.6 286,471 + Dsui_0286 0.38 +1.1 286,479 - Dsui_0286 0.42 +0.7 286,479 - Dsui_0286 0.42 +0.8 286,479 - Dsui_0286 0.42 -1.1 286,479 - Dsui_0286 0.42 +1.1 286,484 - Dsui_0286 0.44 +1.0 286,489 - Dsui_0286 0.46 +0.4 286,489 - Dsui_0286 0.46 +0.6 286,548 + Dsui_0286 0.71 +0.5 286,548 + Dsui_0286 0.71 -0.4 286,556 - Dsui_0286 0.75 +0.9 286,608 + -3.0 286,616 - +0.7 286,616 - +1.9 286,618 + -0.6 286,669 + -2.8 286,674 + -3.9 286,674 + -1.1 286,674 + -2.8 286,674 + -0.8 286,682 - +1.2 286,682 - -0.5 286,682 - -1.8 286,744 - -2.6 286,788 + +1.6 286,791 - -0.2 287,172 + Dsui_0287 0.67 +0.2 287,194 - Dsui_0287 0.72 +0.7 287,303 + +0.4 287,469 + Dsui_0288 0.41 +1.0 287,479 + Dsui_0288 0.46 +1.3 287,487 - Dsui_0288 0.50 +0.3 287,506 + Dsui_0288 0.58 +1.1 287,531 + Dsui_0288 0.70 +1.2 287,539 - Dsui_0288 0.74 -0.8 287,563 - Dsui_0288 0.85 +2.0 287,565 + Dsui_0288 0.86 +1.0 287,565 + Dsui_0288 0.86 +2.0 287,565 + Dsui_0288 0.86 +1.7 287,575 + +1.6 287,584 + +1.1
Or see this region's nucleotide sequence